Finish 1.2.0

jonas-eschle · Jan 6, 2017 · 2ea0d05 · 2ea0d05
2 parents 97ff44a + 494fea5
commit 2ea0d05
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diff --git a/.travis.yml b/.travis.yml
@@ -20,7 +20,7 @@ deploy:
   provider: pypi
   user: mayou36
   password:
-    secure: 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
+    secure: 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
   distributions: sdist bdist_wheel
   on:
     branch: master
diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle
diff --git a/docs/_build/doctrees/raredecay.run_config.config.doctree b/docs/_build/doctrees/raredecay.run_config.config.doctree
diff --git a/docs/_build/doctrees/raredecay.tools.metrics.doctree b/docs/_build/doctrees/raredecay.tools.metrics.doctree
diff --git a/docs/_build/doctrees/subst.doctree b/docs/_build/doctrees/subst.doctree
diff --git a/docs/_build/html/.buildinfo b/docs/_build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: e7408981b5d1b4bf10ba92bed3402737
+config: 1a24990a35119564e99ddc66f6942a47
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_build/html/_modules/index.html b/docs/_build/html/_modules/index.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Overview: module code &mdash; raredecay 1.1.0 documentation</title>
+  <title>Overview: module code &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../genindex.html"/>
         <link rel="search" title="Search" href="../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../index.html"/> 
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../index.html"/> 
 
 
   <script src="../_static/js/modernizr.min.js"></script>
@@ -61,7 +61,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -172,7 +172,7 @@ <h1>All modules for which code is available</h1>
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/analysis/ml_analysis.html b/docs/_build/html/_modules/raredecay/analysis/ml_analysis.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.analysis.ml_analysis &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.analysis.ml_analysis &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../../genindex.html"/>
         <link rel="search" title="Search" href="../../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../../index.html"/>
         <link rel="up" title="Module code" href="../../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -562,7 +562,12 @@ <h1>Source code for raredecay.analysis.ml_analysis</h1><div class="highlight"><p
         <span class="n">max_auc</span> <span class="o">=</span> <span class="n">report</span><span class="o">.</span><span class="n">compute_metric</span><span class="p">(</span><span class="n">metrics</span><span class="o">.</span><span class="n">RocAuc</span><span class="p">())</span><span class="o">.</span><span class="n">values</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span>
         <span class="n">roc_auc</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">({</span><span class="s1">&#39;all features&#39;</span><span class="p">:</span> <span class="nb">round</span><span class="p">(</span><span class="n">max_auc</span><span class="p">,</span> <span class="mi">4</span><span class="p">)})</span>
         <span class="n">out</span><span class="o">.</span><span class="n">save_fig</span><span class="p">(</span><span class="n">figure</span><span class="o">=</span><span class="s2">&quot;feature importance &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">),</span> <span class="n">importance</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="o">**</span><span class="n">save_fig_cfg</span><span class="p">)</span>
-        <span class="n">report</span><span class="o">.</span><span class="n">feature_importance_shuffling</span><span class="p">()</span><span class="o">.</span><span class="n">plot</span><span class="p">()</span>
+        <span class="c1"># HACK: temp_plotter1 is used to set the plot.new_plot to False,</span>
+        <span class="c1"># which is set to True (unfortunately) in the init of GridPlot</span>
+        <span class="n">temp_plotter1</span> <span class="o">=</span> <span class="n">report</span><span class="o">.</span><span class="n">feature_importance_shuffling</span><span class="p">()</span>
+        <span class="n">temp_plotter1</span><span class="o">.</span><span class="n">new_plot</span> <span class="o">=</span> <span class="kc">False</span>
+        <span class="n">temp_plotter1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">title</span><span class="o">=</span><span class="s2">&quot;Feature importance shuffling of &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">))</span>
+        <span class="c1"># HACK END</span>
         <span class="n">out</span><span class="o">.</span><span class="n">save_fig</span><span class="p">(</span><span class="n">figure</span><span class="o">=</span><span class="s2">&quot;feature correlation &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">),</span> <span class="n">importance</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="o">**</span><span class="n">save_fig_cfg</span><span class="p">)</span>
         <span class="n">report</span><span class="o">.</span><span class="n">features_correlation_matrix</span><span class="p">()</span><span class="o">.</span><span class="n">plot</span><span class="p">()</span>
         <span class="n">out</span><span class="o">.</span><span class="n">save_fig</span><span class="p">(</span><span class="n">figure</span><span class="o">=</span><span class="s2">&quot;ROC curve &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">),</span> <span class="n">importance</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="o">**</span><span class="n">save_fig_cfg</span><span class="p">)</span>
@@ -1604,7 +1609,7 @@ <h1>Source code for raredecay.analysis.ml_analysis</h1><div class="highlight"><p
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/analysis/physical_analysis.html b/docs/_build/html/_modules/raredecay/analysis/physical_analysis.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.analysis.physical_analysis &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.analysis.physical_analysis &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../../genindex.html"/>
         <link rel="search" title="Search" href="../../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../../index.html"/>
         <link rel="up" title="Module code" href="../../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -1060,7 +1060,7 @@ <h1>Source code for raredecay.analysis.physical_analysis</h1><div class="highlig
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/analysis/statistics.html b/docs/_build/html/_modules/raredecay/analysis/statistics.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.analysis.statistics &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.analysis.statistics &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../../genindex.html"/>
         <link rel="search" title="Search" href="../../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../../index.html"/>
         <link rel="up" title="Module code" href="../../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -303,7 +303,7 @@ <h1>Source code for raredecay.analysis.statistics</h1><div class="highlight"><pr
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/globals_.html b/docs/_build/html/_modules/raredecay/globals_.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.globals_ &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.globals_ &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../genindex.html"/>
         <link rel="search" title="Search" href="../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../index.html"/>
         <link rel="up" title="Module code" href="../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -252,7 +252,7 @@ <h1>Source code for raredecay.globals_</h1><div class="highlight"><pre>
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/meta_config.html b/docs/_build/html/_modules/raredecay/meta_config.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.meta_config &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.meta_config &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../genindex.html"/>
         <link rel="search" title="Search" href="../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../index.html"/>
         <link rel="up" title="Module code" href="../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -557,7 +557,7 @@ <h1>Source code for raredecay.meta_config</h1><div class="highlight"><pre>
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/settings.html b/docs/_build/html/_modules/raredecay/settings.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.settings &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.settings &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../genindex.html"/>
         <link rel="search" title="Search" href="../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../index.html"/>
         <link rel="up" title="Module code" href="../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -427,7 +427,7 @@ <h1>Source code for raredecay.settings</h1><div class="highlight"><pre>
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/tools/data_storage.html b/docs/_build/html/_modules/raredecay/tools/data_storage.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.tools.data_storage &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.tools.data_storage &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../../genindex.html"/>
         <link rel="search" title="Search" href="../../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../../index.html"/>
         <link rel="up" title="Module code" href="../../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -1419,7 +1419,7 @@ <h1>Source code for raredecay.tools.data_storage</h1><div class="highlight"><pre
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/tools/data_tools.html b/docs/_build/html/_modules/raredecay/tools/data_tools.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.tools.data_tools &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.tools.data_tools &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../../genindex.html"/>
         <link rel="search" title="Search" href="../../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../../index.html"/>
         <link rel="up" title="Module code" href="../../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -562,7 +562,7 @@ <h1>Source code for raredecay.tools.data_tools</h1><div class="highlight"><pre>
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true

diff --git a/docs/_build/html/_modules/raredecay/tools/dev_tool.html b/docs/_build/html/_modules/raredecay/tools/dev_tool.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>raredecay.tools.dev_tool &mdash; raredecay 1.1.0 documentation</title>
+  <title>raredecay.tools.dev_tool &mdash; raredecay 1.2.0 documentation</title>
 
 
 
@@ -33,7 +33,7 @@
         <link rel="index" title="Index"
               href="../../../genindex.html"/>
         <link rel="search" title="Search" href="../../../search.html"/>
-    <link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
+    <link rel="top" title="raredecay 1.2.0 documentation" href="../../../index.html"/>
         <link rel="up" title="Module code" href="../../index.html"/> 
 
 
@@ -62,7 +62,7 @@
 
 
               <div class="version">
-                1.1.0
+                1.2.0
               </div>
 
 
@@ -411,7 +411,7 @@ <h1>Source code for raredecay.tools.dev_tool</h1><div class="highlight"><pre>
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'../../../',
-            VERSION:'1.1.0',
+            VERSION:'1.2.0',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true