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- docs update 1.1.1
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jonas-eschle committed Jan 6, 2017
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2 changes: 1 addition & 1 deletion docs/_build/html/.buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: e7408981b5d1b4bf10ba92bed3402737
config: 9e96150b792a0d3f13280ff2106bd4c8
tags: 645f666f9bcd5a90fca523b33c5a78b7
8 changes: 4 additions & 4 deletions docs/_build/html/_modules/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>Overview: module code &mdash; raredecay 1.1.0 documentation</title>
<title>Overview: module code &mdash; raredecay 1.1.1 documentation</title>



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<link rel="index" title="Index"
href="../genindex.html"/>
<link rel="search" title="Search" href="../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../index.html"/>


<script src="../_static/js/modernizr.min.js"></script>
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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -172,7 +172,7 @@ <h1>All modules for which code is available</h1>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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15 changes: 10 additions & 5 deletions docs/_build/html/_modules/raredecay/analysis/ml_analysis.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.analysis.ml_analysis &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.analysis.ml_analysis &mdash; raredecay 1.1.1 documentation</title>



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<link rel="index" title="Index"
href="../../../genindex.html"/>
<link rel="search" title="Search" href="../../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -562,7 +562,12 @@ <h1>Source code for raredecay.analysis.ml_analysis</h1><div class="highlight"><p
<span class="n">max_auc</span> <span class="o">=</span> <span class="n">report</span><span class="o">.</span><span class="n">compute_metric</span><span class="p">(</span><span class="n">metrics</span><span class="o">.</span><span class="n">RocAuc</span><span class="p">())</span><span class="o">.</span><span class="n">values</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span>
<span class="n">roc_auc</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">({</span><span class="s1">&#39;all features&#39;</span><span class="p">:</span> <span class="nb">round</span><span class="p">(</span><span class="n">max_auc</span><span class="p">,</span> <span class="mi">4</span><span class="p">)})</span>
<span class="n">out</span><span class="o">.</span><span class="n">save_fig</span><span class="p">(</span><span class="n">figure</span><span class="o">=</span><span class="s2">&quot;feature importance &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">),</span> <span class="n">importance</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="o">**</span><span class="n">save_fig_cfg</span><span class="p">)</span>
<span class="n">report</span><span class="o">.</span><span class="n">feature_importance_shuffling</span><span class="p">()</span><span class="o">.</span><span class="n">plot</span><span class="p">()</span>
<span class="c1"># HACK: temp_plotter1 is used to set the plot.new_plot to False,</span>
<span class="c1"># which is set to True (unfortunately) in the init of GridPlot</span>
<span class="n">temp_plotter1</span> <span class="o">=</span> <span class="n">report</span><span class="o">.</span><span class="n">feature_importance_shuffling</span><span class="p">()</span>
<span class="n">temp_plotter1</span><span class="o">.</span><span class="n">new_plot</span> <span class="o">=</span> <span class="kc">False</span>
<span class="n">temp_plotter1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">title</span><span class="o">=</span><span class="s2">&quot;Feature importance shuffling of &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">))</span>
<span class="c1"># HACK END</span>
<span class="n">out</span><span class="o">.</span><span class="n">save_fig</span><span class="p">(</span><span class="n">figure</span><span class="o">=</span><span class="s2">&quot;feature correlation &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">),</span> <span class="n">importance</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="o">**</span><span class="n">save_fig_cfg</span><span class="p">)</span>
<span class="n">report</span><span class="o">.</span><span class="n">features_correlation_matrix</span><span class="p">()</span><span class="o">.</span><span class="n">plot</span><span class="p">()</span>
<span class="n">out</span><span class="o">.</span><span class="n">save_fig</span><span class="p">(</span><span class="n">figure</span><span class="o">=</span><span class="s2">&quot;ROC curve &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">clf_name</span><span class="p">),</span> <span class="n">importance</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="o">**</span><span class="n">save_fig_cfg</span><span class="p">)</span>
Expand Down Expand Up @@ -1604,7 +1609,7 @@ <h1>Source code for raredecay.analysis.ml_analysis</h1><div class="highlight"><p
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/analysis/physical_analysis.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.analysis.physical_analysis &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.analysis.physical_analysis &mdash; raredecay 1.1.1 documentation</title>



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<link rel="index" title="Index"
href="../../../genindex.html"/>
<link rel="search" title="Search" href="../../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -1060,7 +1060,7 @@ <h1>Source code for raredecay.analysis.physical_analysis</h1><div class="highlig
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/analysis/statistics.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.analysis.statistics &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.analysis.statistics &mdash; raredecay 1.1.1 documentation</title>



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<link rel="index" title="Index"
href="../../../genindex.html"/>
<link rel="search" title="Search" href="../../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -303,7 +303,7 @@ <h1>Source code for raredecay.analysis.statistics</h1><div class="highlight"><pr
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/globals_.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.globals_ &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.globals_ &mdash; raredecay 1.1.1 documentation</title>



Expand All @@ -33,7 +33,7 @@
<link rel="index" title="Index"
href="../../genindex.html"/>
<link rel="search" title="Search" href="../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../index.html"/>
<link rel="up" title="Module code" href="../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -252,7 +252,7 @@ <h1>Source code for raredecay.globals_</h1><div class="highlight"><pre>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/meta_config.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.meta_config &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.meta_config &mdash; raredecay 1.1.1 documentation</title>



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<link rel="index" title="Index"
href="../../genindex.html"/>
<link rel="search" title="Search" href="../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../index.html"/>
<link rel="up" title="Module code" href="../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -557,7 +557,7 @@ <h1>Source code for raredecay.meta_config</h1><div class="highlight"><pre>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/settings.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.settings &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.settings &mdash; raredecay 1.1.1 documentation</title>



Expand All @@ -33,7 +33,7 @@
<link rel="index" title="Index"
href="../../genindex.html"/>
<link rel="search" title="Search" href="../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../index.html"/>
<link rel="up" title="Module code" href="../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -427,7 +427,7 @@ <h1>Source code for raredecay.settings</h1><div class="highlight"><pre>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/tools/data_storage.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.tools.data_storage &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.tools.data_storage &mdash; raredecay 1.1.1 documentation</title>



Expand All @@ -33,7 +33,7 @@
<link rel="index" title="Index"
href="../../../genindex.html"/>
<link rel="search" title="Search" href="../../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -1419,7 +1419,7 @@ <h1>Source code for raredecay.tools.data_storage</h1><div class="highlight"><pre
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/tools/data_tools.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.tools.data_tools &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.tools.data_tools &mdash; raredecay 1.1.1 documentation</title>



Expand All @@ -33,7 +33,7 @@
<link rel="index" title="Index"
href="../../../genindex.html"/>
<link rel="search" title="Search" href="../../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -562,7 +562,7 @@ <h1>Source code for raredecay.tools.data_tools</h1><div class="highlight"><pre>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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8 changes: 4 additions & 4 deletions docs/_build/html/_modules/raredecay/tools/dev_tool.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>raredecay.tools.dev_tool &mdash; raredecay 1.1.0 documentation</title>
<title>raredecay.tools.dev_tool &mdash; raredecay 1.1.1 documentation</title>



Expand All @@ -33,7 +33,7 @@
<link rel="index" title="Index"
href="../../../genindex.html"/>
<link rel="search" title="Search" href="../../../search.html"/>
<link rel="top" title="raredecay 1.1.0 documentation" href="../../../index.html"/>
<link rel="top" title="raredecay 1.1.1 documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<div class="version">
1.1.0
1.1.1
</div>


Expand Down Expand Up @@ -411,7 +411,7 @@ <h1>Source code for raredecay.tools.dev_tool</h1><div class="highlight"><pre>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'1.1.0',
VERSION:'1.1.1',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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