add --break-system-packages on CI

.github/workflows/build_docs.yml

@@ -25,10 +25,10 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Update pip
-        run: python3 -m pip install --upgrade pip setuptools
+        run: python3 -m pip install --break-system-packages --upgrade pip setuptools
 
       - name: Install dependencies
-        run: python3 -m pip install -e ".[docs]"
+        run: python3 -m pip install --break-system-packages -e ".[docs]"
 
       - name: Build docs
         run: jupyter book build -W .

.github/workflows/check_formatting.yml

@@ -15,10 +15,10 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Update pip
-        run: python3 -m pip install --upgrade pip setuptools
+        run: python3 -m pip install --break-system-packages --upgrade pip setuptools
 
       - name: Install code
-        run: python3 -m pip install .[dev]
+        run: python3 -m pip install --break-system-packages.[dev]
 
       - name: Check code formatting with ruff
         run: |

.github/workflows/create_legacy_checkpoint.yml

@@ -20,7 +20,7 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Install legacy version of adios4dolfinx
-        run: python3 -m pip install adios4dolfinx==${adios4dolfinx_version}
+        run: python3 -m pip install --break-system-packages adios4dolfinx==${adios4dolfinx_version}
 
       - name: Create datasets
         run: python3 ./tests/create_legacy_checkpoint.py --output-dir=$data_dir

.github/workflows/test_package.yml

@@ -41,7 +41,7 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Update pip
-        run: python3 -m pip install --upgrade pip setuptools
+        run: python3 -m pip install --break-system-packages --upgrade pip setuptools
 
       - name: Download legacy data
         uses: actions/download-artifact@v4
@@ -56,7 +56,7 @@ jobs:
           path: ./legacy_checkpoint
 
       - name: Install package
-        run: python3 -m pip install .[test]
+        run: python3 -m pip install --break-system-packages .[test]
 
       - name: Run tests
         run: |

.github/workflows/test_package_openmpi.yml

@@ -46,7 +46,7 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Update pip
-        run: python3 -m pip install --upgrade pip setuptools
+        run: python3 -m pip --break-system-packages install --upgrade pip setuptools
 
       - name: Install DOLFINx
         uses: jorgensd/actions/[email protected]
@@ -72,7 +72,7 @@ jobs:
           path: ./legacy_checkpoint
 
       - name: Install package
-        run: python3 -m pip install .[test]
+        run: python3 -m pip install --break-system-packages .[test]
 
       - name: Run tests
         run: |

.github/workflows/test_redhat.yml

@@ -45,7 +45,7 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Update pip
-        run: python3 -m pip install --upgrade pip setuptools
+        run: python3 -m pip install --break-system-packages --upgrade pip setuptools
 
       - name: Install DOLFINx
         uses: jorgensd/actions/[email protected]
@@ -72,7 +72,7 @@ jobs:
           path: ./legacy_checkpoint
 
       - name: Install package
-        run: python3 -m pip install .[test]
+        run: python3 -m pip install --break-system-packages .[test]
 
       - name: Run tests
         run: |