v0.9.1.post0

Various fixes to 0.9.1 to make it compatible with DOLFINx 0.9, due to release branch missing several commits from main.

Full Changelog: v0.9.1...v0.9.1.post0

v0.9.1

Full Changelog: v0.9.0...v0.9.1

v0.9.0

Only changes to be compatible with DOLFINx 0.9.0

What's Changed

• Add Min RK to acknowledgement section of paper by @jorgensd in #115
• Add installation notes for conda by @jorgensd in #116
• Expand adios2 build matrix on openmpi to ensure we are testing 2.9.2 and 2.10.0 by @jorgensd in #117
• Add location of simula to affiliation by @jorgensd in #118
• Add JOSS paper to readme by @jorgensd in #119
• Use joss for citation of software by @jorgensd in #120
• Update CI branches for adios4dolfinx by @jorgensd in #121
• CI update (redhat) by @jorgensd in #122
• Add create connectivity prior to computing midpoints by @jorgensd in #123
• ADd jupytext to docs deps by @jorgensd in #124
• Flattened topo as partition input by @jorgensd in #126
• Follow rules in: https://peps.python.org/pep-0621/#authors-maintainers by @jorgensd in #127
• Local_tag_entites in entities_to_geometry by @jorgensd in #133
• Restrict adios2 to main until new release by @jorgensd in #135
• Bump versions by @jorgensd in #137
• Update release note by @jorgensd in #138

Full Changelog: v0.8.1...v0.9.0

v0.8.2

What's Changed

• Add Min RK to acknowledgement section of paper by @jorgensd in #115
• Add installation notes for conda by @jorgensd in #116
• Expand adios2 build matrix on openmpi to ensure we are testing 2.9.2 and 2.10.0 by @jorgensd in #117
• Add location of simula to affiliation by @jorgensd in #118
• Add JOSS paper to readme by @jorgensd in #119
• Use joss for citation of software by @jorgensd in #120
• Update CI branches for adios4dolfinx by @jorgensd in #121
• CI update (redhat) by @jorgensd in #122
• Do not deploy pages on PR by @finsberg in #131
• Bump version 0.8.1.post0 -> 0.8.2 by @finsberg in #130

Full Changelog: v0.8.1...v0.8.2

v0.8.1.post0

Adding conda packaging with the help of @minrk

What's Changed

• Add Min RK to acknowledgement section of paper by @jorgensd in #115
• Add installation notes for conda by @jorgensd in #116
• Expand adios2 build matrix on openmpi to ensure we are testing 2.9.2 and 2.10.0 by @jorgensd in #117

Full Changelog: v0.8.1...v0.8.1.post0

v0.8.1

Release compatible with DOLFINx v0.8.x.

What's Changed

• Add nate to acknowledgements by @jorgensd in #91
• Remove typo in reference and use full name journals by @jorgensd in #93
• Remove expensive python loop for dof transformations by using new python binding in DOLFINx by @jorgensd in #92
• Update readme and remove flake8 by @jorgensd in #94
• Update README.md conda installation instructions by @jorgensd in #96
• Add instructions for test deps installation to docker as well. by @jorgensd in #97
• Switch adios2 test to release by @jorgensd in #98
• Refactor mesh creation from reading data by @nate-sime in #99
• Update summary of paper for a non-expert audience by @jorgensd in #103
• Add statement of need by @jorgensd in #101
• Add list of examples to README.md by @jorgensd in #100
• Add test instructions by @jorgensd in #102
• API change from FEniCS/dolfinx#3119 by @jorgensd in #104
• Fix bug in reading legacy mesh. by @finsberg in #105
• API updates by @jorgensd in #107
• Increase MPICH runners to 4 processes by @jorgensd in #108
• minor changes in paper.md by @danielskatz in #112
• v0.8.1 release by @jorgensd in #110

New Contributors

• @danielskatz made their first contribution in #112

Full Changelog: v0.8.0...v0.8.1

v0.8.0

Compatible with nightly branch. Created in context of JOSS submission.

New features

• Reading and writing meshtags to checkpoint. by @jorgensd in #48
• Time dependency and multiple functions per file by @jorgensd in #49
• Writing checkpoints based on the input mesh ordering by @jorgensd in #70
• Make it possible to read and write attributes by @finsberg in #80
• Write/Read mesh partitioning data by @jorgensd in #81
• Time dependent mesh checkpoint by @jorgensd in #83

Demos

• Add demos for mesh write/read operations by @jorgensd in #84
• Add example of reading and writing of meshtags. by @jorgensd in #85
• Add demo writing and reading function checkpoint by @jorgensd in #86

API Changes

• Open file in write mode if it does not already exist by @finsberg in #67
• Consistent name for argument filename by @finsberg in #68
• Make API consistent (filename first) in read_ write_ operations. Vectorize dofmap reading from legacy by @jorgensd in #72
• Make it possible to pass name when reading function by @finsberg in #76
• Make it possible to pass name to meshtag by @finsberg in #79
• Draft for JOSS by @jorgensd in #90

Other changes

• Performance improvements + remove numba as dependency by @jorgensd in #51

• Add openmpi to CI by @jorgensd in #61

• Add context manager by @finsberg in #74

• Add pre-commit hooks by @finsberg in #75

• Use tmp-dir and tmp_path to store test files. by @jorgensd in #78

• API compatibility with DOLFINx nightly branch

  • Rename function space by @jorgensd in #36
  • DOF transformation renaming by @jorgensd in #38
  • CoordinateMap API changes by @jorgensd in #43
  • Remove gdim from basix.ufl.element by @jorgensd in #65

• API compatibility with ADIOS2

  • Replace adios2.adios2.ADIOS with adios2.ADIOS by @francesco-ballarin in: #40
  • Backward compatible support for ADIOS2 2.10.x by @nate-sime in #60

New Contributors

• @francesco-ballarin made their first contribution in #39
• @nate-sime made their first contribution in #60

Full Changelog: v0.7.3...v0.8.0

v0.7.3

Important

Every user is suggested to update from v0.7.2 to v0.7.3 as a bug affecting openmpi has been fixed in #56

Other fixes

• Add new legacy bound by @jorgensd in #53

Full Changelog: v0.7.2...v0.7.3

v0.7.2

Major update

Important

Everyone using adios4dolfinx v0.7.1 should upgrade to this new version

Installation

• numba has been removed as a dependency of adios4dolfin

Performance

• Massive performance improvements by @jorgensd in #51

New features

• Supporting time dependent and multi-function checkpoints by @jorgensd. To read checkpoints from version < 0.7.2 please add legacy=True to your read_function call. See: #49 for details
• Supporting reading and writing of mesh-tags of all co-dimensions by @jorgensd #48

Other changes

• Replace adios2.adios2.ADIOS with adios2.ADIOS by @francesco-ballarin in #40
• Update legacy image and fix numpy asarray by @jorgensd in #37
• Set "Test package" workflow to actually run on push on every branch, as the comment in the yml file says by @francesco-ballarin in #41
• Bump actions/{download-artifact,upload-artifact} to v4 by @francesco-ballarin in #44
• Bump actions/{configure-pages,deploy-pages} to v4 by @francesco-ballarin in #45
• Bump citation version and release-date by @jorgensd in #50

New Contributors

• @francesco-ballarin made their first contribution in #40
• Thanks to @finsberg, @francesco-ballarin for reviewing the latest set of features

Full Changelog: v0.7.1...v0.7.2

v0.7.1

Compatible with DOLFINx v0.7.0: https://github.com/FEniCS/dolfinx/releases/tag/v0.7.0

What's Changed

• Update all CIs to use latest images for stable release by @jorgensd in #34

Full Changelog: v0.7.0...v0.7.1