gh actions for all packages

.github/workflows/publish.yaml

@@ -24,7 +24,6 @@ jobs:
     - name: Install dependencies
       run: |
         pip install devpi-client
-        pip install hatch
 
     - name: Authenticate and upload to devpi
       run: |
@@ -41,6 +40,36 @@ jobs:
         pip install hatch
         echo "version=$(hatch version)" >> "$GITHUB_OUTPUT"
   
+  publish-packages:
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        package: [napari-bbox, napari-spfluo, scipion-app, scipion-fluo, scipion-fluo-singleparticle, scipion-pyworkflow, spfluo]
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: '3.11'
+
+    - name: Install dependencies
+      run: |
+        pip install devpi-client
+
+    - name: Authenticate and upload to devpi
+      run: |
+        cd packages/${{ matrix.package }}
+        devpi use https://pypi.spfluo.ovh
+        devpi login jean --password=${{ secrets.DEVPI_PASSWORD }}
+        devpi use jean/dev
+        devpi upload
+      env:
+        DEVPI_PASSWORD: ${{ secrets.DEVPI_PASSWORD }}
+
   compile-requirements:
     runs-on: ubuntu-latest
     needs: publish
@@ -50,7 +79,7 @@ jobs:
       matrix:
         platform: [x86_64-unknown-linux-gnu, x86_64-pc-windows-msvc]
         gpu: [false, true]
-        python_version: ["8", "9", "10", "11", "12"]
+        python_version: ["9", "10", "11", "12"]
 
     steps:
     - name: Checkout repository
@@ -60,7 +89,6 @@ jobs:
       uses: actions/setup-python@v5
       with:
         python-version: |
-          3.8
           3.9
           3.10
           3.11
@@ -100,9 +128,8 @@ jobs:
         --python-version 3.${{ matrix.python_version }}
         --python-platform ${{ matrix.platform }}
         -c constraints.txt
-        --extra=gpu
         --emit-index-url
-        --index-url https://pypi.spfluo.ovh/jean/dev-pytorch-cu124/+simple/  # pytorch is in the deps of spfluo-app[gpu], so we need a custom index
+        --index-url https://pypi.spfluo.ovh/jean/dev-pytorch-cu124/+simple/  # torch is in the deps we need a custom index to enable CUDA
     
     - name: Append to requirements spfluo-app
       run: |

packages/napari-spfluo/hatch.toml

@@ -1,5 +1,6 @@
 [version]
 source = "vcs"
+raw-options = { root = "../.." }
 
 [build.hooks.vcs]
 version-file = "src/napari_spfluo/_version.py"

packages/napari-spfluo/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "napari-spfluo"
-version = "0.0.1"
+dynamic = ["version"]
 description = "A plugin to use spfluo within napari"
 readme = "README.md"
 license = "MIT"
@@ -59,4 +59,4 @@ line-length = 79
 target-version = ['py39', 'py310', 'py311']
 
 [tool.uv.sources]
-spfluo = {workspace = true}
+spfluo = {path = "../spfluo"}

packages/scipion-app/pyproject.toml

@@ -40,4 +40,4 @@ guiplugin = "scipion.guiplugin"
 "scipion" = ["templates/*.template", "templates/*.json"]
 
 [tool.uv.sources]
-scipion-fluo = {workspace = true}
+scipion-fluo = {path = "../scipion-fluo"}

packages/scipion-fluo-singleparticle/hatch.toml

@@ -1,9 +1,12 @@
 [version]
 source = "vcs"
+raw-options = { root = "../.." }
 
 [build.targets.sdist]
 exclude = [
     "/.github",
+    "/.gitignore",
+    "/.pre-commit-config.yaml",
 ]
 
 [build.targets.wheel]

packages/scipion-fluo-singleparticle/pyproject.toml

@@ -8,7 +8,7 @@ description = "Scipion plugin for single particle reconstruction."
 readme = "README.rst"
 authors = [{name = "Jean Plumail", email = "[email protected]"}]
 keywords = ["scipion", "fluorescence", "imageprocessing", "scipion-3.0"]
-version = "0.0.1"
+dynamic = ["version"]
 dependencies = [
     "scipion-pyworkflow",
     "scipion-fluo",
@@ -27,7 +27,7 @@ Repository = "https://github.com/jplumail/scipion-fluo-singleparticle"
 singleparticle = "singleparticle"
 
 [tool.uv.sources]
-scipion-pyworkflow = {workspace=true}
-scipion-fluo = {workspace=true}
-spfluo = {workspace=true}
-napari-spfluo = {workspace=true}
+scipion-pyworkflow = {path="../scipion-pyworkflow"}
+scipion-fluo = {path="../scipion-fluo"}
+spfluo = {path="../spfluo"}
+napari-spfluo = {path="../napari-spfluo"}

packages/scipion-fluo/hatch.toml

@@ -2,6 +2,7 @@ metadata.allow-direct-references = true
 
 [version]
 source = "vcs"
+raw-options = { root = "../.." }
 
 [build.targets.wheel]
 packages = ["pwfluo"]

packages/scipion-fluo/pyproject.toml

@@ -7,7 +7,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "scipion-fluo"
-version = "0.0.1"
+dynamic = ["version"]
 requires-python = ">=3.8"
 description = "Base pyworkflow plugin for Fluorescence image processing"
 readme = "README.rst"
@@ -35,4 +35,4 @@ scipion-fluo = "pwfluo.__main__:main"
 pwfluo = "pwfluo"
 
 [tool.uv.sources]
-scipion-pyworkflow = {workspace = true}
+scipion-pyworkflow = {path = "../scipion-pyworkflow"}