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Update readme.txt
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update readme
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jrcramos committed Feb 20, 2024
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Expand Up @@ -20,18 +20,16 @@ training process. Furthemore, several ways to plot and analyse the results
or simulate from saved files. Different plots are generated and a excel file
"structures_fit_results.xlsx" with the overall results.

The folder ~/data contains data.xlsx with the feed DoE details and the
simulations of concentrations over time generated using a dynamic model.
This is a synthetic dataset, the model was created based on the metabolic model
proposed by Robitaille et al. (2015). It also contains "data.mat"
which import the concentrations, feed and other relevant informations.
Futhermore when imported into matlab data(i).accum is the total
amount of a metabolite that should be in the bioreactor over time, it is
the "sum of all added concentrations × volume added - sample volume × reactor concentration". The
file also contains data(i).m_r which are the reacted amounts over
time. The calculation of data(i).accum is made during the process of
data(i).m_r calculation. The latter is described in the supplementary
material of this paper
The folder ~/data contains data.xlsx with the feed DoE details and the simulations of
concentrations over time generated using a dynamic model. This is a synthetic dataset,
the model was created based on the metabolic model proposed by Robitaille et al. (2015).
It also contains "data.mat" which is the import the concentrations, feed and other relevant
informations. This file is generated using "/data/main_data_processing.m". When imported into
matlab data(i).accum is the total amount of a metabolite that should be in the bioreactor over
time, it is the "sum of all added concentrations × volume added - sample volume × reactor concentration".
The file also contains data(i).m_r which are the reacted amounts over time.
The calculation of data(i).accum is made during the process of data(i).m_r calculation.
The latter is described in the supplementary material of this paper or the file "/data/read_me_data_processing.doc"
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