The goal of bulkPseudotime is to do pseudotime analysis on bulk data. It's recommonded to be applied for time course bulk-seq data.
You can install the development version of bulkPseudotime like so:
# install.packages("devtools")
devtools::install_github("junjunlab/bulkPseudotime")
# or
remotes::install_github("junjunlab/bulkPseudotime")-
Zhao L, Yang Y, Chen J, et al. Dynamic chromatin regulatory programs during embryogenesis of hexaploid wheat. Genome Biol. 2023;24(1):7. Published 2023 Jan 13. doi:10.1186/s13059-022-02844-2
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Liu X, Bie XM, Lin X, et al. Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation [published correction appears in Nat Plants. 2024 Jan;10(1):194. doi: 10.1038/s41477-024-01619-w
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Leiboff S, Hake S. Reconstructing the Transcriptional Ontogeny of Maize and Sorghum Supports an Inverse Hourglass Model of Inflorescence Development. Curr Biol. 2019;29(20):3410-3419.e3. doi:10.1016/j.cub.2019.08.044