Add Guix buildpack

docs/source/config_files.rst

@@ -231,6 +231,27 @@ to produce a reproducible environment.
 To see an example repository visit
 `nix binder example <https://github.com/binder-examples/nix>`_.
 
+.. _manifest.scm:
+
+``manifest.scm`` - the Guix package manager
+===========================================
+
+Specify packages to be installed by the `Guix package manager <https://guix.gnu.org/>`_.
+All packages specified in |manifest|_ will be installed in a container using |guix_package|_.If you do not install Jupyter explicitly, Repo2docker will no be able to start your container. In addition, you can use different `channels <https://guix.gnu.org/manual/en/html_node/Channels.html>`_ rather
+than the ones available by default (official channels of GNU Guix 1.3.0).
+You must describe such channels in a ``channels.scm`` file which will be used
+alongside ``manifest.scm`` with the |guix_time-machine|_ command. Furthermore, using a ``channels.scm`` file lets you `pin a specific revision <https://guix.gnu.org/manual/en/html_node/Replicating-Guix.html>`_ of Guix, allowing you to unambiguously specific the software environment to reproduce.
+
+For more information about Guix please read the `manual <https://guix.gnu.org/manual/en/guix.html>`_.
+
+.. |manifest| replace:: ``manifest.scm``
+.. _manifest: https://guix.gnu.org/manual/en/html_node/Invoking-guix-package.html#index-profile-manifesthy
+
+.. |guix_package| replace:: ``guix package``
+.. _guix_package: https://guix.gnu.org/manual/en/html_node/Invoking-guix-package.html#Invoking-guix-package
+
+.. |guix_time-machine| replace:: ``guix time-machine``
+.. _guix_time-machine: https://guix.gnu.org/manual/en/html_node/Invoking-guix-time_002dmachine.html
 
 ``Dockerfile`` - Advanced environments
 ======================================

repo2docker/app.py

@@ -37,6 +37,7 @@
     PipfileBuildPack,
     PythonBuildPack,
     RBuildPack,
+    GuixBuildPack,
 )
 from . import contentproviders
 from .utils import ByteSpecification, chdir
@@ -95,6 +96,7 @@ def _default_log_level(self):
             JuliaProjectTomlBuildPack,
             JuliaRequireBuildPack,
             NixBuildPack,
+            GuixBuildPack,
             RBuildPack,
             CondaBuildPack,
             PipfileBuildPack,

repo2docker/buildpacks/__init__.py

@@ -8,3 +8,4 @@
 from .legacy import LegacyBinderDockerBuildPack
 from .r import RBuildPack
 from .nix import NixBuildPack
+from .guix import GuixBuildPack

repo2docker/buildpacks/base.py

@@ -718,3 +718,4 @@ def get_start_script(self):
             # the only path evaluated at container start time rather than build time
             return os.path.join("${REPO_DIR}", start)
         return None
+

repo2docker/buildpacks/guix/__init__.py

@@ -0,0 +1,83 @@
+"""BuildPack for guix environments"""
+import os
+
+from ..base import BuildPack, BaseImage
+
+
+class GuixBuildPack(BaseImage):
+    """A Guix Package Manager BuildPack"""
+
+    def get_build_env(self):
+        """"""
+        env = super().get_build_env() + [
+            ("GUIX_DIR", "${APP_BASE}/guix")
+        ]
+        return env
+
+    def get_path(self):
+        """Return paths to be added to PATH environment variable"""
+        path = super().get_path()
+        path.insert(0, "${GUIX_DIR}/bin")
+        return path
+
+
+
+    def get_build_scripts(self):
+        """
+        Install a pinned version of Guix package manager,
+        precised in guix-install.bash.
+        """
+        return super().get_build_scripts() + [
+            (
+                "root",
+                """
+                bash /tmp/.local/bin/guix-install.bash
+                """,
+            ),
+
+        ]
+
+    def get_build_script_files(self):
+
+        """Copying guix installation script on the image"""
+        return {
+            "guix/guix-install.bash":
+                "/tmp/.local/bin/guix-install.bash",
+        }
+
+    def get_assemble_scripts(self):
+        """
+        Launch Guix daemon with --disable-chroot to avoid the need
+        of root privileges for the user.
+        Make sure we never use Debian's python by error by renaming it
+        then, as an user install packages listed in manifest.scm,
+        use guix time-machine if channels.scm file exists.
+        Finally set Guix environment variables.
+        """
+        assemble_script ="""
+                 /var/guix/profiles/per-user/root/current-guix/bin/guix-daemon \
+                 --build-users-group=guixbuild --disable-chroot & \
+                 su - $NB_USER -c '{}' && \
+                 echo 'GUIX_PROFILE="/var/guix/profiles/per-user/'$NB_USER'/guix-profile" ; \
+                 source "$GUIX_PROFILE/etc/profile"'>> /etc/profile.d/99-guix.sh
+                 """
+
+        if os.path.exists(self.binder_path("channels.scm")):
+            assemble_script = assemble_script.format(
+                "guix time-machine -C  " + self.binder_path("channels.scm") +
+                " -- package -m "  + self.binder_path("manifest.scm")
+            )
+        else:
+            assemble_script = assemble_script.format(
+                "guix package -m " + self.binder_path("manifest.scm")
+            )
+        return super().get_assemble_scripts() + [
+            ( "root",
+              assemble_script,
+             )
+        ]
+
+    def detect(self):
+        """Check if current repo should be built with the guix BuildPack"""
+        return os.path.exists(self.binder_path("manifest.scm"))
+

repo2docker/buildpacks/guix/guix-install.bash

@@ -0,0 +1,14 @@
+#!/bin/bash
+# This downloads and installs a pinned version of Guix using a pinned version of the installation script.
+# Here is the commit associated with Guix version 1.3.0 the latest version when this script was written.
+set -euxo pipefail
+
+GUIX_COMMIT="a0178d34f582b50e9bdbb0403943129ae5b560ff"
+BIN_VER="1.3.0x86_64-linux"
+GUIX_SHA256="bcdeaa757cd42d2c9de4791272737e9ee0d518398403955f113611f4a893380a"
+
+wget "https://git.savannah.gnu.org/cgit/guix.git/plain/etc/guix-install.sh?id=$GUIX_COMMIT"
+
+echo "$GUIX_SHA256  guix-install.sh?id=$GUIX_COMMIT" | sha256sum -c
+
+(yes || true) | BIN_VER=$BIN_VER bash guix-install.sh?id=$GUIX_COMMIT

tests/guix/binder-dir/README.rst

@@ -0,0 +1,4 @@
+`manifest.scm` in a binder/ directory
+-------------------------------------
+
+Check if we can find and use `manifest.scm` when it is ina `binder/` sub-directory.

tests/guix/binder-dir/binder/manifest.scm

@@ -0,0 +1,3 @@
+(specifications->manifest
+ '("jupyter"
+   "hello"))

tests/guix/binder-dir/verify

@@ -0,0 +1,3 @@
+#!/bin/sh
+
+hello

tests/guix/ignore-outside/README.rst

@@ -0,0 +1,4 @@
+`manifest.scm` in main directory and in `binder/`
+-------------------------------------------------
+
+Check if `manifest.scm` located in the `binder/` sub-directory is prefered to the one in the main directory.

tests/guix/ignore-outside/binder/manifest.scm

@@ -0,0 +1,4 @@
+(specifications->manifest
+ '("jupyter"
+   "python"
+   "python-numpy"))

tests/guix/ignore-outside/manifest.scm

@@ -0,0 +1,2 @@
+(specifications->manifest
+ '("jupyter"))

tests/guix/ignore-outside/verify

@@ -0,0 +1,3 @@
+#!/usr/bin/env python3
+
+import numpy

tests/guix/simple-channels/README.rst

@@ -0,0 +1,4 @@
+`manifest.scm` and `channels.scm` in main directory
+---------------------------------------------------
+
+CHeck if we can use `manifest.scm` alongside a `channels.scm` file using `guix time-machine ...` 

tests/guix/simple-channels/channels.scm

@@ -0,0 +1,20 @@
+(list (channel
+        (name 'guix)
+        (url "https://git.savannah.gnu.org/git/guix.git")
+        (commit
+          "f1bfd9f1948a5ff336d737c0614b9a30c2bb3097")
+        (introduction
+          (make-channel-introduction
+            "9edb3f66fd807b096b48283debdcddccfea34bad"
+            (openpgp-fingerprint
+              "BBB0 2DDF 2CEA F6A8 0D1D  E643 A2A0 6DF2 A33A 54FA"))))
+      (channel
+        (name 'nonguix)
+        (url "https://gitlab.com/nonguix/nonguix")
+        (commit
+          "46c1d8bcca674d3a71cd077c52dde9552a89873d")
+        (introduction
+          (make-channel-introduction
+            "897c1a470da759236cc11798f4e0a5f7d4d59fbc"
+            (openpgp-fingerprint
+              "2A39 3FFF 68F4 EF7A 3D29  12AF 6F51 20A0 22FB B2D5")))))

tests/guix/simple-channels/manifest.scm

@@ -0,0 +1,3 @@
+(specifications->manifest
+ '("jupyter"
+   "hello"))

tests/guix/simple-channels/verify

@@ -0,0 +1,3 @@
+#!/bin/sh
+
+hello

tests/guix/simple/README.rst

@@ -0,0 +1,5 @@
+
+`manifest.scm` in the main directory
+----------------------------------
+
+Check if we can find and use `manifest.scm` when it is in the main directory.

tests/guix/simple/manifest.scm

@@ -0,0 +1,3 @@
+(specifications->manifest
+ '("jupyter"
+   "hello"))

tests/guix/simple/verify

@@ -0,0 +1,3 @@
+#!/bin/sh
+
+hello