add composite action to set up pyenv #54
Workflow file for this run
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| --- | |
| name: Lint and test workflow | |
| on: | |
| push: | |
| branches: ["*", "!push-action/*"] | |
| pull_request: | |
| branches: ["*", "!push-action/*"] | |
| jobs: | |
| quality: | |
| name: Lint code | |
| if: github.event.pull_request.merged == false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Python environment | |
| uses: khanlab/actions/.github/actions/action-setup_task-pyenv@enh/install-project | |
| with: | |
| python-version: "3.10" | |
| reference: ${{ github.event.pull_request.id || github.event.after }} | |
| - name: yamlfix | |
| run: poetry run poe yamlfix-check | |
| - name: isort | |
| run: poetry run poe isort-check | |
| - name: black | |
| run: poetry run poe black-check | |
| - name: ruff | |
| run: poetry run poe ruff-check | |
| - name: snakefmt | |
| run: poetry run poe snakefmt-check | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: [quality] | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - name: Clone repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Python environment | |
| uses: khanlab/actions/.github/actions/action-setup_task-pyenv@enh/install-project | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| reference: ${{ github.event.pull_request.id || github.event.after }} | |
| run: poetry install --no-interaction --no-root --with dev | |
| - name: Test minimum inputs | |
| run: poetry run poe test_base | |
| - name: Test freesurfer input | |
| run: poetry run poe test_freesurfer | |
| - name: Test responsemean input | |
| run: poetry run poe test_responsemean | |
| - name: Test dwi input | |
| run: poetry run poe test_dwi | |
| - name: Test custom labelmerge inputs | |
| run: poetry run poe test_labelmerge | |
| - name: Test using single atlas (skipping labelmerge) | |
| run: poetry run poe test_skip_labelmerge | |
| - name: Test sessions | |
| run: poetry run poe test_sessions |