Bump version to 0.3.1 #62
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| --- | |
| name: Lint and test workflow | |
| on: | |
| push: | |
| branches: ['*', '!push-action/*'] | |
| pull_request: | |
| branches: ['*', '!push-action/*'] | |
| jobs: | |
| quality: | |
| name: Lint code | |
| if: github.event.pull_request.merged == false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone repo | |
| uses: actions/checkout@master | |
| - name: Setup Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-3.10 | |
| restore-keys: ${{ runner.os }}-pip-3.10 | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}-3.10 | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root --with dev | |
| - name: yamlfix | |
| run: poetry run poe yamlfix-check | |
| - name: isort | |
| run: poetry run poe isort-check | |
| - name: black | |
| run: poetry run poe black-check | |
| - name: ruff | |
| run: poetry run poe ruff-check | |
| - name: snakefmt | |
| run: poetry run poe snakefmt-check | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: [quality] | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| steps: | |
| - name: Clone repo | |
| uses: actions/checkout@master | |
| - name: Select Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ matrix.python-version }} | |
| restore-keys: ${{ runner.os }}-pip-${{ matrix.python-version }} | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}-${{ matrix.python-version | |
| }} | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root --with dev | |
| - name: Test minimum inputs | |
| run: poetry run poe test_base | |
| - name: Test freesurfer input | |
| run: poetry run poe test_freesurfer | |
| - name: Test responsemean input | |
| run: poetry run poe test_responsemean | |
| - name: Test dwi input | |
| run: poetry run poe test_dwi | |
| - name: Test custom labelmerge inputs | |
| run: poetry run poe test_labelmerge | |
| - name: Test using single atlas (skipping labelmerge) | |
| run: poetry run poe test_skip_labelmerge | |
| - name: Test sessions | |
| run: poetry run poe test_sessions |