Update ggforest.R #604
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Update ggforest.R #604
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Proposed fix for ggforest. Error was being presented when attempting to run ggforest with coxph model: Error in match.names(clabs, names(xi)) : names do not match previous names Isolated where column names for allTerms were using variable names, which would prevent rbind from working. By relabeling column names before rbind, ggforest functions as expected. R version 4.2.1 (2022-06-23 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19044) Matrix products: default locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 [4] LC_NUMERIC=C LC_TIME=English_United States.utf8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] ggstatsplot_0.9.4 survminer_0.4.9 ggpubr_0.4.0 survival_3.4-0 modelsummary_1.0.2 summarytools_1.0.1 [7] SAScii_1.0.1 labelled_2.10.0 forcats_0.5.2 stringr_1.4.1 dplyr_1.0.10 purrr_0.3.5 [13] readr_2.1.3 tidyr_1.2.1 tibble_3.1.8 ggplot2_3.3.6 tidyverse_1.3.2 loaded via a namespace (and not attached): [1] googledrive_2.0.0 colorspace_2.0-3 ggsignif_0.6.3 pryr_0.1.5 ellipsis_0.3.2 [6] markdown_1.1 parameters_0.19.0 base64enc_0.1-3 fs_1.5.2 gridtext_0.1.5 [11] ggtext_0.1.2 rstudioapi_0.14 farver_2.1.1 bit64_4.0.5 fansi_1.0.3 [16] lubridate_1.8.0 xml2_1.3.3 codetools_0.2-18 splines_4.2.1 cachem_1.0.6 [21] knitr_1.40 zeallot_0.1.0 Formula_1.2-4 jsonlite_1.8.2 broom_1.0.1 [26] km.ci_0.5-6 dbplyr_2.2.1 compiler_4.2.1 httr_1.4.4 backports_1.4.1 [31] assertthat_0.2.1 Matrix_1.5-1 fastmap_1.1.0 gargle_1.2.1 cli_3.4.1 [36] htmltools_0.5.3 tools_4.2.1 gtable_0.3.1 glue_1.6.2 reshape2_1.4.4 [41] tables_0.9.6 Rcpp_1.0.9 carData_3.0-5 jquerylib_0.1.4 cellranger_1.1.0 [46] vctrs_0.4.2 svglite_2.1.0 insight_0.18.5 xfun_0.33 rvest_1.0.3 [51] lifecycle_1.0.3 estimatr_1.0.0 rstatix_0.7.0 googlesheets4_1.0.1 MASS_7.3-57 [56] zoo_1.8-11 scales_1.2.1 vroom_1.6.0 hms_1.1.2 parallel_4.2.1 [61] rematch2_2.1.2 gridExtra_2.3 KMsurv_0.1-5 pander_0.6.5 sass_0.4.2 [66] stringi_1.7.8 paletteer_1.4.1 bayestestR_0.13.0 checkmate_2.1.0 systemfonts_1.0.4 [71] rlang_1.0.6 pkgconfig_2.0.3 matrixStats_0.62.0 evaluate_0.17 lattice_0.20-45 [76] labeling_0.4.2 patchwork_1.1.2 rapportools_1.1 cowplot_1.1.1 bit_4.0.4 [81] tidyselect_1.2.0 plyr_1.8.7 magrittr_2.0.3 R6_2.5.1 magick_2.7.3 [86] generics_0.1.3 DBI_1.1.3 pillar_1.8.1 haven_2.5.1 withr_2.5.0 [91] datawizard_0.6.2 abind_1.4-5 performance_0.10.0 modelr_0.1.9 crayon_1.5.2 [96] car_3.1-0 survMisc_0.5.6 utf8_1.2.2 correlation_0.8.3 tzdb_0.3.0 [101] rmarkdown_2.17 grid_4.2.1 readxl_1.4.1 data.table_1.14.2 webshot_0.5.4 [106] reprex_2.0.2 digest_0.6.29 xtable_1.8-4 statsExpressions_1.3.4 munsell_0.5.0 [111] viridisLite_0.4.1 kableExtra_1.3.4 bslib_0.4.0 tcltk_4.2.1
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@bnolan7 are you able to add @kassambara as a reviewer? |
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@davedestep nope, it doesn't look like I am able to do that. Based on GitHub's docs, it says I must be an owner or collaborator to be able to request @kassambara to specifically review this pull request. |
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Proposed fix for ggforest. Error was being presented when attempting to run ggforest with coxph model: Error in match.names(clabs, names(xi)) :
names do not match previous names
Isolated where column names for allTerms were using variable names, which would prevent rbind from working. By relabeling column names before rbind, ggforest functions as expected.
R version 4.2.1 (2022-06-23 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggstatsplot_0.9.4 survminer_0.4.9 ggpubr_0.4.0 survival_3.4-0 modelsummary_1.0.2 summarytools_1.0.1
[7] SAScii_1.0.1 labelled_2.10.0 forcats_0.5.2 stringr_1.4.1 dplyr_1.0.10 purrr_0.3.5
[13] readr_2.1.3 tidyr_1.2.1 tibble_3.1.8 ggplot2_3.3.6 tidyverse_1.3.2