vre

VRE analysis project

Recombination detection within the VRE groups from 2014

Name		Name	Last commit message	Last commit date
Latest commit History 47 Commits
ClonalFrame		ClonalFrame
Phylogenetics		Phylogenetics
figs		figs
final_data		final_data
final_figures		final_figures
outbreaker		outbreaker
pangenome		pangenome
phylogeny_code		phylogeny_code
results/fastqc_on_RD_fails		results/fastqc_on_RD_fails
scripts		scripts
.gitignore		.gitignore
All_MLST_Results.csv		All_MLST_Results.csv
README.md		README.md
Tn_data.csv		Tn_data.csv
VRE_metadataInclClinical_12022015.csv		VRE_metadataInclClinical_12022015.csv
VRE_metadataInclClinical_12022015_pm.csv		VRE_metadataInclClinical_12022015_pm.csv
VREf_pangenome_20150213_renamed_PresenceAbsence.csv		VREf_pangenome_20150213_renamed_PresenceAbsence.csv
VREf_pangenome_20150213_renamed_PresenceAbsence_transposed.csv		VREf_pangenome_20150213_renamed_PresenceAbsence_transposed.csv
pangenome_annotation_110215.sh		pangenome_annotation_110215.sh

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