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user guide added
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Katarzyna Sikora committed Jul 14, 2017
1 parent a27ab93 commit a4cc423
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions WGBS.pipe.ruffus.py
Original file line number Diff line number Diff line change
Expand Up @@ -145,7 +145,7 @@
print('Converted reference genome not specified, will be generated by the pipeline.')
args.convRef=True
else:
logger.info('Converted reference genome not recognized. Please check spelling and/or path.')
logger.error('Converted reference genome not recognized. Please check spelling and/or path.')

logger.debug('Reference genome is '+refG)
logger.debug('Converted reference genome is '+crefG)
Expand All @@ -172,7 +172,7 @@
######################################################################################################

#add folder with custom modules to path
sys.path.append('/data/manke/repository/scripts/DNA_methylation/WGBS_pipe/v0.01')
sys.path.append('/data/manke/repository/scripts/DNA_methylation/WGBS_pipe/v0.02')

#############################PIPELINE#################################################################################
#TRIM READS############################################################################################################
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