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105 Open 160 Closed
105 Open 160 Closed
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Issues list

Add opto / multi-opto dataset to testing pipeline
#437 opened Mar 27, 2025 by abuzarmahmood
Decomposition of spikes into basis functions blech_bot
#436 opened Mar 26, 2025 by abuzarmahmood
3
Interlocking of classes in blech_process.py and blech_process_utils.py is getting too complicated blech_bot under_development
#434 opened Mar 25, 2025 by abuzarmahmood
1
5
Train a "foundational" blechRNN model with a "standard" PCA representation aligned across datasets
#431 opened Mar 20, 2025 by abuzarmahmood
Have colors in cluster_map cluster assignments and clustered channels in normalized_channels match... Common average reference blech_bot
#430 opened Mar 20, 2025 by abuzarmahmood
1
Fix sharing y-axis of PSTHs in blech_units_characteristics blech_bot under_development
#428 opened Mar 20, 2025 by abuzarmahmood
1
3
Refactor blech_exp_info.py for better organization and clarity blech_bot under_development
#427 opened Mar 20, 2025 by abuzarmahmood
1
5
Instead of BGM for common_avg_reference, use K-Means with BIC for 1-10 clusters blech_bot under_development
#424 opened Mar 19, 2025 by abuzarmahmood
1
3
ability perform common average reference on sections of time to be able to handle longer recordings blech_bot
#422 opened Mar 19, 2025 by abuzarmahmood
3
for common_avg_reference...if a CAR group has only one electrode, no need to process it at all blech_bot under_development
#421 opened Mar 19, 2025 by abuzarmahmood
1
3
parallelize blech_units_characteristics plotting blech_bot
#414 opened Mar 18, 2025 by abuzarmahmood
1
parallelize blech_units_plot blech_bot
#413 opened Mar 18, 2025 by abuzarmahmood
1
Implement backend of cluster_handler blech_bot
#412 opened Mar 17, 2025 by abuzarmahmood
3
Create ability in cluster_handler to handle a dictionary of waveforms
#409 opened Mar 17, 2025 by abuzarmahmood
2
plot noise scatter even if throw_out_noise is true blech_bot under_development
#407 opened Mar 17, 2025 by abuzarmahmood
1
5
common average reference should happen after filtering electrode to avoid including large fluctuations in the average blech_bot
#404 opened Mar 14, 2025 by abuzarmahmood
1
Top hat transformation to remove oscillations other than spikes prior to blech _process.py blech_bot
#403 opened Mar 14, 2025 by abuzarmahmood
1
Feature Request: envelope view of waveforms from run_process blech_bot under_development
#402 opened Mar 13, 2025 by Mraymon5
1
8
Add laser handling capability to infer_rnn_rates.py blech_bot
#389 opened Mar 6, 2025 by abuzarmahmood
5
When calculating firing rates in ephys_data.py, also calculate and save a time vec relative to stimulus delivery blech_bot under_development
#388 opened Mar 6, 2025 by abuzarmahmood
1
3
ISI_violations_thresholds in sorting_params_template are not being used in auto-sorting process. blech_bot
#386 opened Mar 5, 2025 by abuzarmahmood
1
Move the datashader_temp directory in blech_units_plot.py inside the unit_waveform_plot directory blech_bot under_development
#385 opened Mar 5, 2025 by abuzarmahmood
1
3
Blech_units_characteristics isn't using psth_params specified in sorting params file blech_bot under_development
#384 opened Mar 5, 2025 by abuzarmahmood
1
7
For channel correlation plot (heatmap), add CAR group names to axes along with channel numbers blech_bot
#383 opened Mar 5, 2025 by abuzarmahmood
3
ephys_data.py outputs wrong digin names with wrong tastes during palatability indexing, why? blech_bot under_development
#381 opened Mar 5, 2025 by emmalala123
1
3
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