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Update experiment directory.
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kayeekayee committed Sep 20, 2024
1 parent 69d54ea commit 146bd4c
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Showing 78 changed files with 3,974 additions and 2,500 deletions.
9 changes: 6 additions & 3 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.aero
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,9 @@ case ${machine} in
"WCOSS2")
AERO_INPUTS_DIR="/lfs/h2/emc/global/noscrub/emc.global/data/gocart_emissions"
;;
"GAEA")
AERO_INPUTS_DIR="/gpfs/f5/epic/proj-shared/global/glopara/data/gocart_emissions"
;;
"JET")
AERO_INPUTS_DIR="/lfs4/HFIP/hfv3gfs/glopara/data/gocart_emissions"
;;
Expand All @@ -30,12 +33,12 @@ case ${machine} in
esac
export AERO_INPUTS_DIR

export AERO_DIAG_TABLE="${HOMEgfs}/parm/ufs/fv3/diag_table.aero"
export AERO_FIELD_TABLE="${HOMEgfs}/parm/ufs/fv3/field_table.aero"
export AERO_DIAG_TABLE="${PARMgfs}/ufs/fv3/diag_table.aero"
export AERO_FIELD_TABLE="${PARMgfs}/ufs/fv3/field_table.aero"
# Biomass burning emission dataset. Choose from: gbbepx, qfed, none
export AERO_EMIS_FIRE="qfed"
# Directory containing GOCART configuration files
export AERO_CONFIG_DIR="${HOMEgfs}/parm/ufs/gocart"
export AERO_CONFIG_DIR="${PARMgfs}/ufs/gocart"

# Aerosol convective scavenging factors (list of string array elements)
# Element syntax: '<tracer_name>:<factor>'. Use <tracer_name> = * to set default factor for all aerosol tracers
Expand Down
17 changes: 9 additions & 8 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.aeroanl
Original file line number Diff line number Diff line change
Expand Up @@ -6,25 +6,26 @@
echo "BEGIN: config.aeroanl"

export CASE_ANL=${CASE}
export OBS_YAML_DIR=${HOMEgfs}/sorc/gdas.cd/parm/aero/obs/config/
export OBS_LIST=${HOMEgfs}/sorc/gdas.cd/parm/aero/obs/lists/gdas_aero_prototype.yaml
export OBS_LIST="${PARMgfs}/gdas/aero/obs/lists/gdas_aero.yaml.j2"
export STATICB_TYPE='identity'
export BERROR_YAML=${HOMEgfs}/sorc/gdas.cd/parm/aero/berror/staticb_${STATICB_TYPE}.yaml
export FIXgdas=${HOMEgfs}/fix/gdas
export BERROR_DATA_DIR=${FIXgdas}/bump/aero/${CASE_ANL}/
export BERROR_YAML="${PARMgfs}/gdas/aero/berror/staticb_${STATICB_TYPE}.yaml.j2"
export BERROR_DATA_DIR="${FIXgfs}/gdas/bump/aero/${CASE_ANL}/"
export BERROR_DATE="20160630.000000"

export CRTM_FIX_YAML="${PARMgfs}/gdas/aero_crtm_coeff.yaml.j2"
export JEDI_FIX_YAML="${PARMgfs}/gdas/aero_jedi_fix.yaml.j2"

export io_layout_x=1
export io_layout_y=1

export JEDIEXE=${HOMEgfs}/exec/fv3jedi_var.x
export JEDIEXE="${EXECgfs}/gdas.x"

if [[ "${DOIAU}" == "YES" ]]; then
export aero_bkg_times="3,6,9"
export AEROVARYAML=${HOMEgfs}/sorc/gdas.cd/parm/aero/variational/3dvar_fgat_gfs_aero.yaml
export JEDIYAML="${PARMgfs}/gdas/aero/variational/3dvar_fgat_gfs_aero.yaml.j2"
else
export aero_bkg_times="6"
export AEROVARYAML=${HOMEgfs}/sorc/gdas.cd/parm/aero/variational/3dvar_gfs_aero.yaml
export JEDIYAML="${PARMgfs}/gdas/aero/variational/3dvar_gfs_aero.yaml.j2"
fi

echo "END: config.aeroanl"
2 changes: 1 addition & 1 deletion FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.aeroanlfinal
Original file line number Diff line number Diff line change
Expand Up @@ -6,5 +6,5 @@
echo "BEGIN: config.aeroanlfinal"

# Get task specific resources
. $EXPDIR/config.resources aeroanlfinal
source "${EXPDIR}/config.resources" aeroanlfinal
echo "END: config.aeroanlfinal"
2 changes: 1 addition & 1 deletion FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.aeroanlinit
Original file line number Diff line number Diff line change
Expand Up @@ -6,5 +6,5 @@
echo "BEGIN: config.aeroanlinit"

# Get task specific resources
. $EXPDIR/config.resources aeroanlinit
source "${EXPDIR}/config.resources" aeroanlinit
echo "END: config.aeroanlinit"
2 changes: 1 addition & 1 deletion FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.aeroanlrun
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,6 @@
echo "BEGIN: config.aeroanlrun"

# Get task specific resources
. $EXPDIR/config.resources aeroanlrun
source "${EXPDIR}/config.resources" aeroanlrun

echo "END: config.aeroanlrun"
70 changes: 38 additions & 32 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.anal
Original file line number Diff line number Diff line change
Expand Up @@ -12,20 +12,13 @@ if [[ ${DONST} = "YES" ]]; then
. ${EXPDIR}/config.nsst
fi

if [[ "${CDUMP}" = "gfs" ]] ; then
if [[ "${RUN}" == "gfs" ]] ; then
export USE_RADSTAT="NO" # This can be only used when bias correction is not-zero.
export GENDIAG="NO"
export SETUP='diag_rad=.false.,diag_pcp=.false.,diag_conv=.false.,diag_ozone=.false.,write_diag(3)=.false.,niter(2)=100,'
export DIAG_TARBALL="YES"
fi

export npe_gsi=${npe_anal}

if [[ "${CDUMP}" == "gfs" ]] ; then
export npe_gsi=${npe_anal_gfs}
export nth_anal=${nth_anal_gfs}
fi

# Set parameters specific to L127
if [[ ${LEVS} = "128" ]]; then
export GRIDOPTS="nlayers(63)=1,nlayers(64)=1,"
Expand All @@ -45,51 +38,58 @@ export AMSR2BF=${AMSR2BF:-/dev/null}

# Set default values for info files and observation error
# NOTE: Remember to set PRVT in config.prep as OBERROR is set below
export CONVINFO=${FIXgsi}/global_convinfo.txt
export OZINFO=${FIXgsi}/global_ozinfo.txt
export SATINFO=${FIXgsi}/global_satinfo.txt
export OBERROR=${FIXgsi}/prepobs_errtable.global

export CONVINFO=${FIXgfs}/gsi/global_convinfo.txt
export OZINFO=${FIXgfs}/gsi/global_ozinfo.txt
export SATINFO=${FIXgfs}/gsi/global_satinfo.txt
export OBERROR=${FIXgfs}/gsi/prepobs_errtable.global

if [[ ${GSI_SOILANAL} = "YES" ]]; then
export hofx_2m_sfcfile=".true."
export reducedgrid=".false." # not possible for sfc analysis, Jeff Whitaker says it's not useful anyway
export paranc=".false." # temporary until sfc io coded for parance (PR being prepared by T. Gichamo)
export CONVINFO=${FIXgfs}/gsi/global_convinfo_2mObs.txt
export ANAVINFO=${FIXgfs}/gsi/global_anavinfo_soilanal.l127.txt
fi

# Use experimental dumps in EMC GFS v16 parallels
if [[ ${RUN_ENVIR} == "emc" ]]; then
# Set info files and prepobs.errtable.global for GFS v16 retrospective parallels
if [[ "${PDY}${cyc}" -ge "2019021900" && "${PDY}${cyc}" -lt "2019110706" ]]; then
export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2019021900
export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2019021900
export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2019021900
export OBERROR=${FIXgfs}/gsi/gfsv16_historical/prepobs_errtable.global.2019021900
fi

# Place GOES-15 AMVs in monitor, assimilate GOES-17 AMVs, assimilate KOMPSAT-5 gps
if [[ "${PDY}${cyc}" -ge "2019110706" && "${PDY}${cyc}" -lt "2020040718" ]]; then
export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2019110706
export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2019110706
export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2019110706
export OBERROR=${FIXgfs}/gsi/gfsv16_historical/prepobs_errtable.global.2019110706
fi

# Assimilate 135 (T) & 235 (uv) Canadian AMDAR observations
if [[ "${PDY}${cyc}" -ge "2020040718" && "${PDY}${cyc}" -lt "2020052612" ]]; then
export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020040718
export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2020040718
export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2020040718
export OBERROR=${FIXgfs}/gsi/gfsv16_historical/prepobs_errtable.global.2020040718
fi

# Assimilate COSMIC-2
if [[ "${PDY}${cyc}" -ge "2020052612" && "${PDY}${cyc}" -lt "2020082412" ]]; then
export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020052612
export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2020040718
export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2020052612
export OBERROR=${FIXgfs}/gsi/gfsv16_historical/prepobs_errtable.global.2020040718
fi

# Assimilate HDOB
if [[ "${PDY}${cyc}" -ge "2020082412" && "${PDY}${cyc}" -lt "2020091612" ]]; then
export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020082412
export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2020082412
fi

# Assimilate Metop-C GNSSRO
if [[ "${PDY}${cyc}" -ge "2020091612" && "${PDY}${cyc}" -lt "2021031712" ]]; then
export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020091612
export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2020091612
fi

# Assimilate DO-2 GeoOptics
if [[ "${PDY}${cyc}" -ge "2021031712" && "${PDY}${cyc}" -lt "2021091612" ]]; then
export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2021031712
export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2021031712
fi

# NOTE:
Expand All @@ -98,38 +98,38 @@ if [[ ${RUN_ENVIR} == "emc" ]]; then
# needed at this time.
# Assimilate COSMIC-2 GPS
# if [[ "${PDY}${cyc}" -ge "2021110312" && "${PDY}${cyc}" -lt "YYYYMMDDHH" ]]; then
# export CONVINFO=$FIXgsi/gfsv16_historical/global_convinfo.txt.2021110312
# export CONVINFO=${FIXgfs}/gsi/gfsv16_historical/global_convinfo.txt.2021110312
# fi

# Turn off assmilation of OMPS during period of bad data
if [[ "${PDY}${cyc}" -ge "2020011600" && "${PDY}${cyc}" -lt "2020011806" ]]; then
export OZINFO=${FIXgsi}/gfsv16_historical/global_ozinfo.txt.2020011600
export OZINFO=${FIXgfs}/gsi/gfsv16_historical/global_ozinfo.txt.2020011600
fi


# Set satinfo for start of GFS v16 parallels
if [[ "${PDY}${cyc}" -ge "2019021900" && "${PDY}${cyc}" -lt "2019110706" ]]; then
export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2019021900
export SATINFO=${FIXgfs}/gsi/gfsv16_historical/global_satinfo.txt.2019021900
fi

# Turn on assimilation of Metop-C AMSUA and MHS
if [[ "${PDY}${cyc}" -ge "2019110706" && "${PDY}${cyc}" -lt "2020022012" ]]; then
export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2019110706
export SATINFO=${FIXgfs}/gsi/gfsv16_historical/global_satinfo.txt.2019110706
fi

# Turn off assimilation of Metop-A MHS
if [[ "${PDY}${cyc}" -ge "2020022012" && "${PDY}${cyc}" -lt "2021052118" ]]; then
export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2020022012
export SATINFO=${FIXgfs}/gsi/gfsv16_historical/global_satinfo.txt.2020022012
fi

# Turn off assimilation of S-NPP CrIS
if [[ "${PDY}${cyc}" -ge "2021052118" && "${PDY}${cyc}" -lt "2021092206" ]]; then
export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2021052118
export SATINFO=${FIXgfs}/gsi/gfsv16_historical/global_satinfo.txt.2021052118
fi

# Turn off assimilation of MetOp-A IASI
if [[ "${PDY}${cyc}" -ge "2021092206" && "${PDY}${cyc}" -lt "2021102612" ]]; then
export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2021092206
export SATINFO=${FIXgfs}/gsi/gfsv16_historical/global_satinfo.txt.2021092206
fi

# NOTE:
Expand All @@ -139,8 +139,14 @@ if [[ ${RUN_ENVIR} == "emc" ]]; then
#
# Turn off assmilation of all Metop-A MHS
# if [[ "${PDY}${cyc}" -ge "2021110312" && "${PDY}${cyc}" -lt "YYYYMMDDHH" ]]; then
# export SATINFO=$FIXgsi/gfsv16_historical/global_satinfo.txt.2021110312
# export SATINFO=${FIXgfs}/gsi/gfsv16_historical/global_satinfo.txt.2021110312
# fi
fi

# Flag to turn on (.true.) or off (.false.) the infrared cloud and aerosol detection software
# for AIRS, CrIS, and IASI. Default is .false.
export AIRS_CADS=".false."
export CRIS_CADS=".false."
export IASI_CADS=".false."

echo "END: config.anal"
6 changes: 1 addition & 5 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.analcalc
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,6 @@
echo "BEGIN: config.analcalc"

# Get task specific resources
. $EXPDIR/config.resources analcalc

if [[ "$CDUMP" == "gfs" ]]; then
export nth_echgres=$nth_echgres_gfs
fi
. ${EXPDIR}/config.resources analcalc

echo "END: config.analcalc"
31 changes: 24 additions & 7 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmanl
Original file line number Diff line number Diff line change
Expand Up @@ -5,17 +5,34 @@

echo "BEGIN: config.atmanl"

export CASE_ANL=${CASE}
export OBS_YAML_DIR=${HOMEgfs}/sorc/gdas.cd/parm/atm/obs/config/
export OBS_LIST=${HOMEgfs}/sorc/gdas.cd/parm/atm/obs/lists/gdas_prototype_3d.yaml
export ATMVARYAML=${HOMEgfs}/sorc/gdas.cd/parm/atm/variational/3dvar_dripcg.yaml
export STATICB_TYPE="gsibec"
export BERROR_YAML=${HOMEgfs}/sorc/gdas.cd/parm/atm/berror/staticb_${STATICB_TYPE}.yaml
export JCB_BASE_YAML="${PARMgfs}/gdas/atm/jcb-base.yaml.j2"
export JCB_ALGO_YAML=${PARMgfs}/gdas/atm/jcb-prototype_3dvar.yaml.j2

export STATICB_TYPE=gsibec
export LOCALIZATION_TYPE="bump"
export INTERP_METHOD='barycentric'

if [[ ${DOHYBVAR} = "YES" ]]; then
# shellcheck disable=SC2153
export CASE_ANL=${CASE_ENS}
export BERROR_YAML="atmosphere_background_error_hybrid_${STATICB_TYPE}_${LOCALIZATION_TYPE}"
else
export CASE_ANL=${CASE}
export BERROR_YAML="atmosphere_background_error_static_${STATICB_TYPE}"
fi

export CRTM_FIX_YAML="${PARMgfs}/gdas/atm_crtm_coeff.yaml.j2"
export JEDI_FIX_YAML="${PARMgfs}/gdas/atm_jedi_fix.yaml.j2"
export VAR_BKG_STAGING_YAML="${PARMgfs}/gdas/staging/atm_var_bkg.yaml.j2"
export BERROR_STAGING_YAML="${PARMgfs}/gdas/staging/atm_berror_${STATICB_TYPE}.yaml.j2"
export FV3ENS_STAGING_YAML="${PARMgfs}/gdas/staging/atm_var_fv3ens.yaml.j2"

export layout_x_atmanl=8
export layout_y_atmanl=8

export io_layout_x=1
export io_layout_y=1

export JEDIEXE=${HOMEgfs}/exec/fv3jedi_var.x
export JEDIEXE=${EXECgfs}/gdas.x

echo "END: config.atmanl"
14 changes: 14 additions & 0 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmanlfv3inc
Original file line number Diff line number Diff line change
@@ -0,0 +1,14 @@
#! /usr/bin/env bash

########## config.atmanlfv3inc ##########
# Atm Var Analysis specific

echo "BEGIN: config.atmanlfv3inc"

# Get task specific resources
. "${EXPDIR}/config.resources" atmanlfv3inc

export JCB_ALGO=fv3jedi_fv3inc_variational
export JEDIEXE=${EXECgfs}/fv3jedi_fv3inc.x

echo "END: config.atmanlfv3inc"
1 change: 1 addition & 0 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmanlinit
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,5 @@ echo "BEGIN: config.atmanlinit"

# Get task specific resources
. "${EXPDIR}/config.resources" atmanlinit

echo "END: config.atmanlinit"
11 changes: 11 additions & 0 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmanlvar
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
#! /usr/bin/env bash

########## config.atmanlvar ##########
# Atm Var Analysis specific

echo "BEGIN: config.atmanlvar"

# Get task specific resources
. "${EXPDIR}/config.resources" atmanlvar

echo "END: config.atmanlvar"
15 changes: 11 additions & 4 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmensanl
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,21 @@

echo "BEGIN: config.atmensanl"

export OBS_YAML_DIR=${HOMEgfs}/sorc/gdas.cd/parm/atm/obs/config/
export OBS_LIST=${HOMEgfs}/sorc/gdas.cd/parm/atm/obs/lists/lgetkf_prototype.yaml
export ATMENSYAML=${HOMEgfs}/sorc/gdas.cd/parm/atm/lgetkf/lgetkf.yaml
export JCB_BASE_YAML="${PARMgfs}/gdas/atm/jcb-base.yaml.j2"
export JCB_ALGO_YAML=${PARMgfs}/gdas/atm/jcb-prototype_lgetkf.yaml.j2

export INTERP_METHOD='barycentric'

export CRTM_FIX_YAML="${PARMgfs}/gdas/atm_crtm_coeff.yaml.j2"
export JEDI_FIX_YAML="${PARMgfs}/gdas/atm_jedi_fix.yaml.j2"
export LGETKF_BKG_STAGING_YAML="${PARMgfs}/gdas/staging/atm_lgetkf_bkg.yaml.j2"

export layout_x_atmensanl=8
export layout_y_atmensanl=8

export io_layout_x=1
export io_layout_y=1

export JEDIEXE=${HOMEgfs}/exec/fv3jedi_letkf.x
export JEDIEXE=${EXECgfs}/gdas.x

echo "END: config.atmensanl"
14 changes: 14 additions & 0 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmensanlfv3inc
Original file line number Diff line number Diff line change
@@ -0,0 +1,14 @@
#! /usr/bin/env bash

########## config.atmensanlfv3inc ##########
# Atm Var Analysis specific

echo "BEGIN: config.atmensanlfv3inc"

# Get task specific resources
. "${EXPDIR}/config.resources" atmensanlfv3inc

export JCB_ALGO=fv3jedi_fv3inc_lgetkf
export JEDIEXE=${EXECgfs}/fv3jedi_fv3inc.x

echo "END: config.atmensanlfv3inc"
1 change: 1 addition & 0 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmensanlinit
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,5 @@ echo "BEGIN: config.atmensanlinit"

# Get task specific resources
. "${EXPDIR}/config.resources" atmensanlinit

echo "END: config.atmensanlinit"
11 changes: 11 additions & 0 deletions FV3GFSwfm/rt_v17p8_ugwpv1_c3_mynn/config.atmensanlletkf
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
#! /usr/bin/env bash

########## config.atmensanlletkf ##########
# Atm Ens Analysis specific

echo "BEGIN: config.atmensanlletkf"

# Get task specific resources
. "${EXPDIR}/config.resources" atmensanlletkf

echo "END: config.atmensanlletkf"
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