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GetFromKEGG

Get data from KEGG online database using jsoup jar

Data Reptile Code

GetDiseasesFromKEGG

Get the Diseases Data From KEGG.

The latest KEGG-Disease Data is 20170314 version ( file path : disease/kegg/Kegg_Diseases_All_Data_20170314)

Data Column

KEGG Disease ID
Name
Description
Category
Gene
Drug
Env factor
Carcinogen
Comment
Marker
Reference
Other DBs

GetDrugGroupFromKEGG

Get the Drug Group Data From KEGG

Data Column

KEGG DrugGroup ID
Name
Member
Remark
Comment

GetDrugsFromKEGG

Get the Drugs Data From KEGG

Data Column

KEGG Drug ID
Name
Formula
Exact mass
Mol weight
Other DBs

Data Process Code

OMIM_to_DrugBank

Get the OMIM-DrungBank associations

Pipeline

  • Get the Original Data From KEGG

      1. Get the Diseases Data
  2. Get the Drugs Data
  3. Get the DrugGroup Data

  • Extract the Data Of KEGG Data

      1. Get the (disease id - drug ids - omim ids) data  from Diseases Data
  2. Get the (drug id - drugbank id) data from Drugs Data
  3. Get the (druggroup id - drug id) data from DrugGroup Data
  4. Get the OMIM IDs to DrugBank associations data