Code

Jim dev#151

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kazewong merged 220 commits into150-slow-initialize-point-generationkazewong/jim:150-slow-initialize-point-generationfrom jim-devkazewong/jim:jim-devCopy head branch name to clipboardSep 10, 2024

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Commits

Commits on Jul 9, 2024

• Update utils.py

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Commits on Jul 23, 2024

• Update Single_event_runManager.py

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• Merge pull request #105 from kazewong/main

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• Merge branch 'kazewong:jim-dev' into jim-dev

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• Merge pull request #102 from thomasckng/jim-dev

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Commits on Jul 24, 2024

• Update utils.py

  xuyuon

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• scaffolding jim to handle naming.

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• Rename variables in jim

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• Starting tracking names in jim

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• Merge branch 'kazewong:main' into add-spin-transform

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• Update utils.py

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• Update utils.py

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• Update utils.py

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• Update utils.py

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• Updated utils.py

  

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• Add Transform class

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• Updated runManager.py

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• updated SingleEventRun

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• Add LogitToUniform Transform

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• Add logit distribution

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• Update the runManager

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• Add propagate)name method in transform

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• Rename composite to Combine for combining priors

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• Updated runManager.py

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• scaffold prior test

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• Create verify_transform.py

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• Add Sequential Transform

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• Separate logit and scaling.

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• Univeriate Transform seems working

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• Updated runManager.py

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• Add test for spin transform

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• Finish spin transform test

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• Uniform prior now working.

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• Add likelihood name check

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• Rename test file

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• Updated runManager.py

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• Added inverse transform and uniform now perform correct

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• Add comments to current sequential transform prior class

  kazewong

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Commits on Jul 25, 2024

• Updated runManager.py and Single_event_runManager.py

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• Updated runManager.py

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• Reformatted files

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• Updated runManager.py

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• Changed corner plot default setting

  xuyuon

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• Removing inverse.

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• Add transformation function

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• Combine should be working now

  kazewong

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• Sine is an illegal transform since its Jacobian could be negative

  kazewong

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• Modify Uniform and add UniformSphere

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Commits on Jul 26, 2024

• Add Sine and Cosine Prior

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• Revert "Modify Uniform and add UniformSphere"

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• Add standard normal distribution

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• Add periodic uniform prior

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• Reformat

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into sphere_prior

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• Revert "Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into sphere_prior"

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• Minor text change

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• Remove PeriodicUniform

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• Use self.sample_base

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• Update prior.py

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• Update prior.py to include powerLaw

  xuyuon

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• Update transforms.py

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• format and updating typing hint

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• Revert "Update transforms.py"

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• Revert "Update prior.py to include powerLaw"

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into sphere_prior

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• Comment out old prior

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• Reformat

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• Merge pull request #111 from thomasckng/sphere_prior

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• Update Prior naming

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• Standize Transform naming

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• Merge pull request #107 from xuyuon/run-manager

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• Updated Test files

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• Merge pull request #88 from xuyuon/add-spin-transform

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• Fixing naming problem and add base_distribution tracer

  kazewong

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• Merge pull request #2 from kazewong/98-moving-naming-tracking-into-jim-class-from-prior-class

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• Updated powerlaw

  xuyuon

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• Updated powerlaw

  xuyuon

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• Updated powerlaw

  xuyuon

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• Updated powerlaw

  xuyuon

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• Updated prior.py to include UniformComponenChirpMassPrior

  xuyuon

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Commits on Jul 27, 2024

• Fix priors

  thomasckng

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• Add prior tests

  thomasckng

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• Merge branch 'prior-test' into 98-moving-naming-tracking-into-jim-class-from-prior-class

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Commits on Jul 29, 2024

• Set constraint on powerlaw prior input

  xuyuon

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• Added test_power_law

  xuyuon

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• Updated ParetoTransform to avoid divide by zero

  xuyuon

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• Revert update on ParetoTransform

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• Updated test_prior.py

  xuyuon

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• Updated test_prior.py

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• Updated test_prior.py

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• Updated test_prior.py

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• Updated test_prior.py

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• Updated test_prior.py

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• Remove unnecessary test

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• Reformat

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• Change naming

  thomasckng

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• Removed bilby

  xuyuon

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• Merge pull request #113 from xuyuon/98-moving-naming-tracking-into-jim-class-from-prior-class

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• Move unit test to unit directory

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• Update priors naming issue

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• base parameter names seem working

  kazewong

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• fix cosine naming error

  kazewong

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• prior test now all pass

  kazewong

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• Fix likelihood sampling issue due to parameter name transformation

  kazewong

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Commits on Jul 30, 2024

• Instead of defining univariate and multivariate,

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• Adding some transform, should be working

  kazewong

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• Refactor into NtoN and NtoM transform

  kazewong

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• Fix bugs in ArcSine

  kazewong

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• Add inverse mass transform

  thomasckng

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Commits on Jul 31, 2024

• Update sequential prior class and test_GW15014.py.

  kazewong

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• Merge pull request #5 from kazewong/98-moving-naming-tracking-into-jim-class-from-prior-class

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• correct sign errors and minior bugs

  kazewong

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• Add mass transform

  thomasckng

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• Fixed powerLaw

  xuyuon

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• Fixed powerLaw

  xuyuon

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• Fixed powerLaw

  xuyuon

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• Fixed powerLaw

  xuyuon

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• Add simplex transform

  thomasckng

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform

  thomasckng

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• Change transform to take dictionary as input for transform_func

  kazewong

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• Updated test_prior.py

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• Add UniformComponentMassPrior

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• prior system should work with dictionary function now

  kazewong

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• update transform

  kazewong

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform

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• Move subclassing structure

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• Remove transformation

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• Remove prior

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform

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• Add mass transform

  thomasckng

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform

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• Add Bound transforming transform

  kazewong

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Commits on Aug 1, 2024

• no nans now, but the code can be consolidate

  kazewong

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• Merge branch 'kazewong:98-moving-naming-tracking-into-jim-class-from-prior-class' into 98-moving-naming-tracking-into-jim-class-from-prior-class

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• Solve conflict

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform

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• Fixed powerLaw

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• Fixed powerLaw

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• Reformatted

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• Add sky position transform

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• Modify sky position transform

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• Change util func name

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform

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• Revert "Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform"

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• Merge

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• Modify integration test

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• Reformat

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• Add typecheck

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• minor typo

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• Rename sampler

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• Fix test

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into 98-moving-naming-tracking-into-jim-class-from-prior-class

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• Merge pull request #1 from kazewong/98-moving-naming-tracking-into-jim-class-from-prior-class

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• Revert "Fixed PowerLaw prior"

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• Merge pull request #120 from kazewong/revert-115-98-moving-naming-tracking-into-jim-class-from-prior-class

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• Fix BoundToUnbound transform

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• Merge branch 'kazewong:98-moving-naming-tracking-into-jim-class-from-prior-class' into 98-moving-naming-tracking-into-jim-class-from-prior-class

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• Updated prior.py and transforms.py

  xuyuon

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• Updated test_prior.py

  xuyuon

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• Use ifos list

  thomasckng

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• Fix jim summary and get_samples

  thomasckng

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• Fix jim output functions

  thomasckng

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• Modify Transform

  thomasckng

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• Fix jim output

  thomasckng

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• Add comment

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Commits on Aug 2, 2024

• Updated test_prior.py

  xuyuon

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• Updated test_prior.py

  xuyuon

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• Merge pull request #121 from xuyuon/98-moving-naming-tracking-into-jim-class-from-prior-class

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• Add sky position transform

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• Merge branch '98-moving-naming-tracking-into-jim-class-from-prior-class' into transform

  kazewong

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• Add powerlaw transform back

  kazewong

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• Move single_event prior and transform

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• Tidy up test

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• Add utils.py

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• Move log_i0

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• Fixing check

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• Merge pull request #118 from thomasckng/transform

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• Updated jim.py

  xuyuon

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• Added spin transform

  xuyuon

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• Updated transform.py

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• Fix mass transform test

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• Reformated

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• Use PowerLaw for distance

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• Reformated

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• Rename test_GW150914_pv2.py to test_GW150914_PV2.py

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• Add heterodyne test

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• Fix typecheck

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• Shorten test runtime

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• Merge pull request #122 from xuyuon/98-moving-naming-tracking-into-jim-class-from-prior-class

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• Merge pull request #123 from thomasckng/transform

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• Fix jim output functions

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• Merge pull request #127 from thomasckng/transform

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• Added code to create and reverse transforms for more flexibility

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• Make sure 1d transforms are created correctly

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• Merge pull request #6 from kazewong/98-moving-naming-tracking-into-jim-class-from-prior-class

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• Update transforms.py

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• Merge pull request #137 from xuyuon/fix-jacobian

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• Making the tests lightweight again

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• Reverted some src code and updated tests accordingly

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• Updated the tests to the new transforms

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• New transforms

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• precommit

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• Further consolidation as requested

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• Merge pull request #132 from ThibeauWouters/98-moving-naming-tracking-into-jim-class-from-prior-class

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• Merge branch 'jim-dev' of github.com:kazewong/JaxGW into 98-moving-naming-tracking-into-jim-class-from-prior-class

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• Move transform test into unit. Note that the current one will fail because of bilby import

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• Putting transform test in backburner

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• Merge pull request #108 from kazewong/98-moving-naming-tracking-into-jim-class-from-prior-class

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