2020 lectures for Temple's biomedical sciences graduate Bioinformatics class.
2020-03-17
- slides Powerpoint, PDF
- TCC-GUI RNA-seq web app https://infinityloop.shinyapps.io/TCC-GUI/
- References
- Nguyen 2019, on pathway analysis
- Stark 2019, excellent RNA-seq review and overview
- Stupnikov 2018, on impact of sequencing depth
- Zhao 2018, on ribosomal RNA depletion strategies
- homework Word document, pdf
2020-03-24
- slides PDF
- References
- BS-seq, Greenberg 2019, Karemaker 2018
- ChIP-seq Nakato 2017
- ATAC-seq Yan 2020, Cusanovich 2018
- homework Word document, pdf