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add better support for conda #171

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akhanf opened this issue Feb 10, 2022 · 2 comments
Open

add better support for conda #171

akhanf opened this issue Feb 10, 2022 · 2 comments
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enhancement New feature or request

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@akhanf
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akhanf commented Feb 10, 2022

Currently we are using poetry for dependency management, but could be nice to also add direct support for conda (e.g. avoiding problems as in #168).

Could:

  • create a conda environment file for hippunfold as a whole (using conda packages where available)
  • add hippunfold to conda-forge

With conda-forge could perhaps even package binaries for the external dependencies.. Something to consider..

@akhanf akhanf added the enhancement New feature or request label Feb 10, 2022
@jordandekraker
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Just wanted to bump this as discussed in our devs meeting

(June 4, 2024)

Nighres may be challenging but not too bad: nighres/nighres#173

I'll try to play around with this too when i get the chance :)

@akhanf
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akhanf commented Jun 4, 2024

Great!

I have a basic set of recipes in order to get the snakebids conda package built, just need to revisit it:
https://github.com/akhanf/conda-snakebids-builds

And it looks like all our other dependencies are in conda packages already (though may need to confirm versions):
https://anaconda.org/conda-forge/niftyreg
https://anaconda.org/aramislab/ants
https://anaconda.org/conda-forge/convert3d
https://anaconda.org/conda-forge/imagemagick
https://anaconda.org/bioconda/connectome-workbench

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