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@khanlab

Khan Computational Imaging Lab

  • 11 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 47 12

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 17 12

  3. tar2bids tar2bids Public

    Python 7 8

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 111 repositories
  • cvpl_tools Public

    A Python package for utilities and classes related to the file I/O, dataset record keeping for image processing and computer vision.

    khanlab/cvpl_tools’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 14, 2024
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids’s past year of commit activity
    Python 17 MIT 12 22 2 Updated Jul 13, 2024
  • zarrnii Public
    khanlab/zarrnii’s past year of commit activity
    Jupyter Notebook 1 0 1 0 Updated Jul 11, 2024
  • spimquant_CellSeg3D Public Forked from AdaptiveMotorControlLab/CellSeg3D

    A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

    khanlab/spimquant_CellSeg3D’s past year of commit activity
    Python 0 MIT 11 0 0 Updated Jul 11, 2024
  • SPIMquant Public

    SnakeBIDS app for quantiative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant’s past year of commit activity
    Jupyter Notebook 1 0 1 1 Updated Jul 11, 2024
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 2 MIT 1 10 (4 issues need help) 2 Updated Jul 11, 2024
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 47 MIT 12 15 (1 issue needs help) 2 Updated Jul 10, 2024
  • actions Public

    Centralized repo of reusable GH actions

    khanlab/actions’s past year of commit activity
    0 1 0 1 Updated Jul 1, 2024
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 8 1 1 Updated Jul 1, 2024
  • gcnn_dmri Public
    khanlab/gcnn_dmri’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Jul 1, 2024
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