Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

anterior-posterior subdivisions option #294

Open
akhanf opened this issue Jun 4, 2024 · 0 comments
Open

anterior-posterior subdivisions option #294

akhanf opened this issue Jun 4, 2024 · 0 comments
Labels
enhancement New feature or request

Comments

@akhanf
Copy link
Member

akhanf commented Jun 4, 2024

Add a rule and CLI option for performing dynamic subdivision of the atlas into A-P subdivisions.

Values could be '1', 'hbt', 'uhbt' or '#' (any number), where hbt/uhbt will result in a custom subdivision based on applying the consensus HSG protocol on bigbrain (or any other templates/datasets that make sense).

Have some principled way to assigning numeric labels - then also need to create the corresponding LUT dynamically.

The text labels for each, for hbt/uhbt it's obvious - but for custom # of subdivisions.
One option, is we append _AP#of# (CA1_AP1of4, Sub_AP1of4) (todo: add in full example lut for clarity)

Labels that don't overlap with the coordinates (e.g. SRLM, Cyst) need to be excluded from this. Have a list of these to exclude, maybe in the atlas config section.

(Discussed in June 4 2024 Hippo Meeting)

@akhanf akhanf added the enhancement New feature or request label Jun 4, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant