test.yml

---
name: Lint and test workflow
on:
  push:
    branches: ['*', '!push-action/*']
  pull_request:
    branches: ['*', '!push-action/*']
jobs:
  quality:
    name: Lint code
    if: github.event.pull_request.merged == false
    runs-on: ubuntu-latest
    steps:
      - name: Setup Python environment
        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6
        with:
          python-version: '3.10'
      - name: yamlfix
        run: poetry run poe yamlfix-check
      - name: ruff
        run: poetry run poe ruff-lint-check
      - name: snakefmt
        run: poetry run poe snakefmt-check
  test:
    runs-on: ubuntu-latest
    needs: [quality]
    strategy:
      matrix:
        python-version: ['3.8', '3.9', '3.10', '3.11']
    steps:
      - name: Setup Python environments
        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6
        with:
          python-version: ${{ matrix.python-version }}
          install-library: true
      - name: Test minimum inputs
        run: poetry run poe test_base
      - name: Test freesurfer input
        run: poetry run poe test_freesurfer
      - name: Test responsemean input
        run: poetry run poe test_responsemean
      - name: Test dwi input
        run: poetry run poe test_dwi
      - name: Test custom labelmerge inputs
        run: poetry run poe test_labelmerge
      - name: Test using single atlas (skipping labelmerge)
        run: poetry run poe test_skip_labelmerge
      - name: Test sessions
        run: poetry run poe test_sessions