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36 Open 77 Closed
36 Open 77 Closed
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Issues list

clustering transcripts without segmentation
#127 opened Jun 28, 2024 by araksm
create a squidpy or R object using baysor output
#126 opened Jun 20, 2024 by shrutikhare-git
1
Output matrix formatted wrong for tsv
#125 opened Jun 17, 2024 by Hannah-Doerpholz
Square root of negative value error during "using 3D coordinates"
#124 opened Jun 13, 2024 by sapiomr
1
The HTML file output by the baysor preview or baysor run command exceeds 1 GB, making it impossible to browse using a standard web browser.
#121 opened May 27, 2024 by MOSAIFENG
Question about assignment of transcripts in overlapping regions
#120 opened May 1, 2024 by Jwong684
Loading binary image sementation mask as prior: MethodError: no method matching sparse
#119 opened Apr 30, 2024 by Sengels24
1
--prior-segmentation-confidence=1 but contradict to prior_segmentation
#117 opened Apr 1, 2024 by SanoKyohei
Error: Not enough prior cells pass the min_mols_per_cell=10 threshold
#116 opened Mar 29, 2024 by quentinblampey
Version Flag states "nothing"
#115 opened Mar 26, 2024 by JeffreyMaurer
Error while estimating local colours
#114 opened Mar 20, 2024 by gargerd
1
Missing Transcript Plots with Preview
#113 opened Mar 14, 2024 by matthewcormier95
1
Error with downloading artifact of JpegTurbo; tree hash mismatch
#112 opened Mar 7, 2024 by gretajuu
Running 3D Segmentation
#111 opened Feb 6, 2024 by NickDiNapoli
3
Not producing loom file output
#110 opened Feb 6, 2024 by dr-sayyadhury
add more channel
#108 opened Jan 23, 2024 by andynkili
1
Clarification on 'Warning: To many values of z. Using 2D polygons'
#105 opened Nov 28, 2023 by e-manduchi
3
data file paths in docker and plotting
#104 opened Nov 6, 2023 by pmaye
Baysor produces invalid polygons
#103 opened Oct 31, 2023 by pakiessling
boundary_polygons not defined. Baysor v0.6.2
#102 opened Oct 2, 2023 by tsvvas
3
Nuclear-expansion like approach
#101 opened Sep 25, 2023 by maximilian-heeg
The output file "segmentation.csv" cell column value is NaN
#100 opened Sep 15, 2023 by mzj0418
Issues with running the STARmap example
#99 opened Sep 13, 2023 by HongBei-SS
Can't find border for cell and build polygon, no segmentation.csv
#97 opened Sep 6, 2023 by hchen725
Error when using prior segmentation
#95 opened Sep 1, 2023 by kleejin
1
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