CNNeuro-DS-Generator

Dataset generator for the CNNeuro project

Installation on Ubuntu 21.10

1. Clone repository

git clone https://github.com/khoffschlag/CNNeuro-DS-Generator.git

2. Enter the new directory

cd CNNeuro-DS-Generator

3. Install python3.9 and pip3

sudo apt update && sudo apt install python3.9 python3-pip

4. Install the required python packages

pip3 install -r requirements.txt

5. You're ready to try out the example code or write your own dataset generation script!

Troubleshooting

We smoothed our data with 8mm FWHM but the atrophy transformator wants a sigma value. What can I do?

We can convert the given FWHM smoothing value into a corresponding sigma value.

Use the following equation: sigma = ^{FWHM value}⁄_{2.35482004503}

In your case: sigma = ^{FWHM value}⁄_{2.35482004503} = ⁸⁄_{2.35482004503 = 3.397287201153446}

It's probably sufficient here if you round up to 3.4