using most recent kipoi version

kipoi · Apr 25, 2019 · ca5a8bf · ca5a8bf
1 parent 59841be
commit ca5a8bf
Show file tree

Hide file tree

Showing 2 changed files with 9 additions and 11 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -29,14 +29,14 @@ variables:
       command: |
         conda install genomelake pyfaidx -c bioconda
 
-  install_kipoi: &install_kipoi
-    run:
-      name: Install Kipoi
-      command: |
-        git clone [email protected]:DerThorsten/kipoi.git -b niceparse kipoi_pkg
-        cd kipoi_pkg
-        pip install '.' --no-deps
-        cd ..
+  # install_kipoi: &install_kipoi
+  #   run:
+  #     name: Install Kipoi
+  #     command: |
+  #       git clone [email protected]:DerThorsten/kipoi.git -b niceparse kipoi_pkg
+  #       cd kipoi_pkg
+  #       pip install '.' --no-deps
+  #       cd ..
   install_kipoi_veff: &install_kipoi_veff
     run:
       name: Install Kipoi-veff
@@ -81,9 +81,7 @@ jobs:
       - *update_pytorch
       - *install_conda_deps
       - *install_pip_deps
-      - *install_kipoi
       - *install_kipoi_veff
-      - *install_kipoi
       - *kipoi_ls
       - *run_tests
       - *run_coveralls

diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 
 
 requirements = [
-    "kipoi>=0.6.1",
+    "kipoi>=0.6.12",
     #$"git+ssh://[email protected]/DerThorsten/kipoi.git@niceparse",#egg=kipoi,
     "kipoi-utils>=0.1.12",
     # vep