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  1. CADD-scripts CADD-scripts Public

    CADD scripts release for offline scoring. For more information about CADD, please visit our website

    Python 76 33

  2. cfDNA cfDNA Public

    cfDNA analysis workflow

    Python 20 6

  3. CADD-SV CADD-SV Public

    CADD-SV – a framework to score the effect of structural variants

    Python 14 3

  4. hemoMIPs hemoMIPs Public

    Automated analysis and result reporting for targeted sequencing data

    Python 7 3

  5. MPRAsnakeflow MPRAsnakeflow Public

    With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

    Python 4 5

  6. cfDNA-UniFlow cfDNA-UniFlow Public template

    Workflow for preprocessing cfDNA samples.

    Jupyter Notebook 4 1

Repositories

Showing 10 of 22 repositories
  • MPRAsnakeflow Public

    With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

    kircherlab/MPRAsnakeflow’s past year of commit activity
    Python 4 MIT 5 11 2 Updated Feb 5, 2025
  • MPRAOligoDesign Public

    Basic scripts for creating an oligo design file

    kircherlab/MPRAOligoDesign’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Feb 4, 2025
  • CADD-SV Public

    CADD-SV – a framework to score the effect of structural variants

    kircherlab/CADD-SV’s past year of commit activity
    Python 14 MIT 3 3 0 Updated Jan 29, 2025
  • cfDNA_GCcorrection Public
    kircherlab/cfDNA_GCcorrection’s past year of commit activity
    Python 4 1 1 0 Updated Jan 23, 2025
  • MPRA_SaturationMutagenesis Public

    R Shiny website of the Saturation Mutagenesis manuscript

    kircherlab/MPRA_SaturationMutagenesis’s past year of commit activity
    R 3 GPL-3.0 2 2 1 Updated Jan 22, 2025
  • snakemake_wrappers Public

    snakemake wrappers to share with others and to us ethem in multiple projects

    kircherlab/snakemake_wrappers’s past year of commit activity
    Python 0 MIT 2 2 2 Updated Jan 21, 2025
  • BCalm_experiments Public

    Repository containing the scripts for the experiments described in the BCalm manuscript.

    kircherlab/BCalm_experiments’s past year of commit activity
    R 0 0 0 0 Updated Jan 17, 2025
  • kircherlab.github.io Public

    Kircher Lab website

    kircherlab/kircherlab.github.io’s past year of commit activity
    HTML 1 0 0 0 Updated Jan 17, 2025
  • BCalm Public
    kircherlab/BCalm’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Dec 19, 2024
  • CADD-scripts Public

    CADD scripts release for offline scoring. For more information about CADD, please visit our website

    kircherlab/CADD-scripts’s past year of commit activity
    Python 76 33 11 3 Updated Dec 2, 2024
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