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I am trying to run the example but I'm running into an issue below. Seems as if snakemake tries to install some packages and the like but fails on pyrle?
copying tests/__init__.py -> build/lib.linux-x86_64-3.6/tests
creating build/lib.linux-x86_64-3.6/pyrle
copying pyrle/version.py -> build/lib.linux-x86_64-3.6/pyrle
copying pyrle/rledict.py -> build/lib.linux-x86_64-3.6/pyrle
copying pyrle/methods.py -> build/lib.linux-x86_64-3.6/pyrle
copying pyrle/__init__.py -> build/lib.linux-x86_64-3.6/pyrle
copying pyrle/rle.py -> build/lib.linux-x86_64-3.6/pyrle
creating build/lib.linux-x86_64-3.6/pyrle/src
copying pyrle/src/__init__.py -> build/lib.linux-x86_64-3.6/pyrle/src
copying pyrle/src/coverage.pyx -> build/lib.linux-x86_64-3.6/pyrle/src
copying pyrle/src/rle.pyx -> build/lib.linux-x86_64-3.6/pyrle/src
copying pyrle/src/getitem.pyx -> build/lib.linux-x86_64-3.6/pyrle/src
copying pyrle/src/getitem.c -> build/lib.linux-x86_64-3.6/pyrle/src
copying pyrle/src/rle.c -> build/lib.linux-x86_64-3.6/pyrle/src
copying pyrle/src/coverage.c -> build/lib.linux-x86_64-3.6/pyrle/src
running build_ext
building 'pyrle.src.rle' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/pyrle
creating build/temp.linux-x86_64-3.6/pyrle/src
/mnt/BioAdHoc/Groups/vd-ay/jreyna/software/CADD-scripts-1.7/envs/conda/738489c3f99641482618d1c3a806142a_/bin/x86_64-conda-linux-gnu-cc -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /mnt/BioAdHoc/Groups/vd-ay/jreyna/software/CADD-scripts-1.7/envs/conda/738489c3f99641482618d1c3a806142a_/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /mnt/BioAdHoc/Groups/vd-ay/jreyna/software/CADD-scripts-1.7/envs/conda/738489c3f99641482618d1c3a806142a_/include -fPIC -I. -I/mnt/BioAdHoc/Groups/vd-ay/jreyna/software/CADD-scripts-1.7/envs/conda/738489c3f99641482618d1c3a806142a_/include/python3.6m -c pyrle/src/rle.c -o build/temp.linux-x86_64-3.6/pyrle/src/rle.o
In file included from pyrle/src/rle.c:29:
/mnt/BioAdHoc/Groups/vd-ay/jreyna/software/CADD-scripts-1.7/envs/conda/738489c3f99641482618d1c3a806142a_/include/python3.6m/Python.h:39:10: fatal error: crypt.h: No such file or directory
39 | #include <crypt.h>
| ^~~~~~~~~
compilation terminated.
error: command '/mnt/BioAdHoc/Groups/vd-ay/jreyna/software/CADD-scripts-1.7/envs/conda/738489c3f99641482618d1c3a806142a_/bin/x86_64-conda-linux-gnu-cc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for pyrle
ERROR: Could not build wheels for pyrle, which is required to install pyproject.toml-based projects
failed
CondaEnvException: Pip failed
Thanks in advanced,
Joaquin
The text was updated successfully, but these errors were encountered:
I released a new CADD-scripts version v1.7.1. Maybe you try that one. Now it is recommended to use apptainer/singularity and all environments are packed within a container and no conda builds are needed (container is 17GB large). You also need now snakemake 8.
Hi,
I am trying to run the example but I'm running into an issue below. Seems as if snakemake tries to install some packages and the like but fails on pyrle?
Thanks in advanced,
Joaquin
The text was updated successfully, but these errors were encountered: