Develop

[mwakok]

Added

• Add GPU support with cupy and dask #49
• Notebook with example of iterative calculation of lagtimes and with example of interactive data analysis using ipywidgets
• Add export of ddmMatrix as netcdf and csv files
• Add slicing of dataset when loading as numpy (not dask)
• Add option to load sliced data #48
• Add development guides to documentation

Changed

• Write wrapper for ddmMatrix calculation that automatically detects CPU or GPU processing and numpy or dask input
• Use sphinx-autosummary with custom template to recursively generate the API references

Fixed

• During the analysis output the intermediate data to text so you don't have to run the whole thing every time #43

[codecov]

Codecov Report

Merging #53 (c0083f9) into master (f870b0b) will decrease coverage by 7.24%.
The diff coverage is 30.31%.

@@            Coverage Diff             @@
##           master      #53      +/-   ##
==========================================
- Coverage   60.63%   53.39%   -7.25%     
==========================================
  Files          10       11       +1     
  Lines         315      442     +127     
==========================================
+ Hits          191      236      +45     
- Misses        124      206      +82     

Impacted Files	Coverage Δ
ddm/data_handling/dask_image.py	62.22% <ø> (ø)
ddm/plotting.py	0.00% <0.00%> (ø)
ddm/processing.py	16.80% <16.52%> (-3.72%)	⬇️
ddm/data_handling/exporting.py	29.16% <29.16%> (ø)
ddm/utils.py	45.71% <32.00%> (-36.11%)	⬇️
ddm/fitting.py	60.34% <55.26%> (+11.85%)	⬆️
ddm/__init__.py	100.00% <100.00%> (ø)
ddm/data_handling/__init__.py	100.00% <100.00%> (ø)
ddm/data_handling/read_file.py	96.66% <100.00%> (+0.23%)	⬆️
ddm/simulation.py	80.00% <100.00%> (ø)
... and 2 more

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