Run GJF again

src/main/java/org/jabref/cli/JabRefCLI.java

@@ -28,7 +28,7 @@ public class JabRefCLI {
             100; // Number of characters per line before a line break must be added.
     private static final String WRAPPED_LINE_PREFIX =
             ""; // If a line break is added, this prefix will be inserted at the beginning of the
-                // next line
+    // next line
     private static final String STRING_TABLE_DELIMITER = " : ";
 
     private final CommandLine cl;

src/main/java/org/jabref/gui/ai/components/aichat/AiChatComponent.java

@@ -226,7 +226,7 @@ private List<Notification> updateNotificationsForEntry(BibEntry entry) {
                                     assert ingestionStatus
                                             .getException()
                                             .isPresent(); // When the state is ERROR, the exception
-                                                          // must be present.
+                                    // must be present.
 
                                     notifications.add(
                                             new Notification(

src/main/java/org/jabref/gui/autocompleter/SuggestionProvider.java

@@ -50,10 +50,8 @@ public final Collection<T> provideSuggestions(ISuggestionRequest request) {
             Equivalence<T> equivalence = getEquivalence();
             return getSource()
                     .filter(candidate -> isMatch(candidate, request))
-                    .map(
-                            equivalence
-                                    ::wrap) // Need to do a bit of acrobatic as there is no
-                                            // distinctBy method
+                    .map(equivalence::wrap) // Need to do a bit of acrobatic as there is no
+                    // distinctBy method
                     .distinct()
                     .limit(10)
                     .map(Equivalence.Wrapper::get)
@@ -70,10 +68,8 @@ public List<T> getPossibleSuggestions() {
         Comparator<T> comparator = getComparator().reversed();
         Equivalence<T> equivalence = getEquivalence();
         return getSource()
-                .map(
-                        equivalence
-                                ::wrap) // Need to do a bit of acrobatic as there is no distinctBy
-                                        // method
+                .map(equivalence::wrap) // Need to do a bit of acrobatic as there is no distinctBy
+                // method
                 .distinct()
                 .map(Equivalence.Wrapper::get)
                 .sorted(comparator)

src/main/java/org/jabref/gui/desktop/os/Linux.java

@@ -138,7 +138,7 @@ public void openFolderAndSelectFile(Path filePath) throws IOException {
                         new String[] {
                             "nemo", absoluteFilePath
                         }; // Although nemo is based on nautilus it does not support --select, it
-                           // directly highlights the file
+                // directly highlights the file
             } else if (desktopSession.contains("xfce")) {
                 cmd = new String[] {"thunar", absoluteFilePath};
             }

src/main/java/org/jabref/gui/exporter/ExportCommand.java

@@ -159,7 +159,7 @@ private void export(
                                     fileDirForDatabase,
                                     abbreviationRepository);
                             return null; // can not use BackgroundTask.wrap(Runnable) because
-                                         // Runnable.run() can't throw Exceptions
+                            // Runnable.run() can't throw Exceptions
                         })
                 .onSuccess(
                         save -> {

src/main/java/org/jabref/gui/fieldeditors/FieldEditorFX.java

@@ -47,8 +47,8 @@ default void establishBinding(
                     if (e.getEventType()
                                     == KeyEvent
                                             .KEY_PRESSED // if not checked, it will be fired twice:
-                                                         // once for key pressed and once for key
-                                                         // released
+                            // once for key pressed and once for key
+                            // released
                             && e.isShortcutDown()) {
                         if (keyBindingRepository.matches(e, KeyBinding.UNDO)) {
                             undoAction.execute();

src/main/java/org/jabref/gui/fieldeditors/LinkedFilesEditor.java

@@ -220,7 +220,7 @@ private Node createFileDisplay(LinkedFileViewModel linkedFile) {
         HBox.setHgrow(info, Priority.ALWAYS);
         info.setStyle(
                 "-fx-padding: 0.5em 0 0.5em 0;"); // To align with buttons below which also have
-                                                  // 0.5em padding
+        // 0.5em padding
         info.getChildren().setAll(label, progressIndicator);
 
         Button acceptAutoLinkedFile = IconTheme.JabRefIcons.AUTO_LINKED_FILE.asButton();

src/main/java/org/jabref/gui/frame/JabRefFrame.java

@@ -381,7 +381,7 @@ private void initKeyBindings() {
                                 break;
                             case PASTE:
                                 if (OS.OS_X) { // Workaround for a jdk issue that executes paste
-                                               // twice when using cmd+v in a TextField
+                                    // twice when using cmd+v in a TextField
                                     // Extra workaround for CodeArea, which does not inherit from
                                     // TextInputControl
                                     if (!(stateManager.getFocusOwner().isPresent()
@@ -492,7 +492,7 @@ private void initBindings() {
                                             libraryTab.textProperty().getValue()
                                                     + " – "
                                                     + FRAME_TITLE, // not a minus, but codepoint
-                                                                   // 2013
+                                    // 2013
                                     libraryTab.textProperty());
                     mainStage.titleProperty().bind(windowTitle);
                 });

src/main/java/org/jabref/gui/frame/MainMenu.java

@@ -641,7 +641,7 @@ StandardActions.PARSE_LATEX, new ParseLatexAction(stateManager)),
                                         stateManager,
                                         (UiTaskExecutor)
                                                 taskExecutor)), // we know at this point that this
-                                                                // is a UITaskExecutor
+                        // is a UITaskExecutor
                         new SeparatorMenuItem(),
                         createSendSubMenu(factory, dialogService, stateManager, preferences),
                         pushToApplicationMenuItem,

src/main/java/org/jabref/gui/openoffice/OOBibBase.java

@@ -924,9 +924,8 @@ public void guiActionUpdateDocument(List<BibDatabase> databases, OOStyle style)
                     syncOptions
                             .setUpdateBibliography(true)
                             .setAlwaysAddCitedOnPages(
-                                    this
-                                            .alwaysAddCitedOnPages); // TODO: Provide option to
-                                                                     // user: this is always false
+                                    this.alwaysAddCitedOnPages); // TODO: Provide option to
+                    // user: this is always false
 
                     unresolvedKeys =
                             Update.synchronizeDocument(

src/main/java/org/jabref/gui/openoffice/StyleSelectDialogView.java

@@ -212,10 +212,9 @@ private void initialize() {
         availableListView.setOnMouseClicked(
                 event -> {
                     if (event.getClickCount() == 2) {
-                        viewModel
-                                .handleCslStyleSelection(); // Only CSL styles can be selected with
-                                                            // a double click, JStyles show a style
-                                                            // description instead
+                        viewModel.handleCslStyleSelection(); // Only CSL styles can be selected with
+                        // a double click, JStyles show a style
+                        // description instead
                         this.setResult(viewModel.getSelectedStyle());
                         this.close();
                     }

src/main/java/org/jabref/gui/preferences/ai/AiTabViewModel.java

@@ -70,7 +70,7 @@ public class AiTabViewModel implements PreferenceTabViewModel {
     private final BooleanProperty disableApiBaseUrl =
             new SimpleBooleanProperty(
                     true); // {@link HuggingFaceChatModel} and {@link GoogleAiGeminiChatModel}
-                           // doesn't support setting API base URL
+    // doesn't support setting API base URL
 
     private final StringProperty openAiApiBaseUrl = new SimpleStringProperty();
     private final StringProperty mistralAiApiBaseUrl = new SimpleStringProperty();

src/main/java/org/jabref/gui/push/AbstractPushToApplication.java

@@ -28,10 +28,10 @@ public abstract class AbstractPushToApplication implements PushToApplication {
     private static final Logger LOGGER = LoggerFactory.getLogger(AbstractPushToApplication.class);
     protected boolean
             couldNotCall; // Set to true in case the command could not be executed, e.g., if the
-                          // file is not found
+    // file is not found
     protected boolean
             couldNotPush; // Set to true in case the tunnel to the program (if one is used) does not
-                          // operate
+    // operate
     protected boolean
             notDefined; // Set to true if the corresponding path is not defined in the preferences
 

src/main/java/org/jabref/gui/push/PushToLyx.java

@@ -83,10 +83,8 @@ public void pushEntries(
         if (!commandPath.endsWith(".in")) {
             commandPath = commandPath + ".in";
         }
-        File lp =
-                new File(
-                        commandPath); // this needs to fixed because it gives "asdf" when going
-                                      // prefs.get("lyxpipe")
+        File lp = new File(commandPath); // this needs to fixed because it gives "asdf" when going
+        // prefs.get("lyxpipe")
         if (!lp.exists() || !lp.canWrite()) {
             // See if it helps to append ".in":
             lp = new File(commandPath + ".in");

src/main/java/org/jabref/gui/slr/ExistingStudySearchAction.java

@@ -130,7 +130,7 @@ protected void crawl() {
                         () -> {
                             crawler.performCrawl();
                             return 0; // Return any value to make this a callable instead of a
-                                      // runnable. This allows throwing exceptions.
+                            // runnable. This allows throwing exceptions.
                         })
                 .onFailure(
                         e -> {

src/main/java/org/jabref/gui/util/FileDialogConfiguration.java

@@ -70,7 +70,7 @@ public FileDialogConfiguration build() {
         public Builder withInitialDirectory(Path directory) {
             if (directory
                     == null) { // It could be that somehow the path is null, for example if it got
-                               // deleted in the meantime
+                // deleted in the meantime
                 initialDirectory = null;
             } else { // Dir must be a folder, not a file
                 if (!Files.isDirectory(directory)) {

src/main/java/org/jabref/logic/bibtex/FieldWriter.java

@@ -129,10 +129,8 @@ private String formatAndResolveStrings(String content, Field field)
 
             if (pos2 == -1) {
                 if (neverFailOnHashes) {
-                    pos1 =
-                            content
-                                    .length(); // just write out the rest of the text, and throw no
-                                               // exception
+                    pos1 = content.length(); // just write out the rest of the text, and throw no
+                    // exception
                 } else {
                     LOGGER.error(
                             "The character {} is not allowed in BibTeX strings unless escaped as in '\\{}'. "

src/main/java/org/jabref/logic/exporter/OpenDocumentRepresentation.java

@@ -158,9 +158,8 @@ public Document getDOMrepresentation() {
                         row,
                         getField(
                                 e,
-                                StandardField
-                                        .AUTHOR)); // new AuthorLastFirst().format(getField(e,
-                                                   // StandardField.AUTHOR_FIELD)));
+                                StandardField.AUTHOR)); // new AuthorLastFirst().format(getField(e,
+                // StandardField.AUTHOR_FIELD)));
                 addTableCell(result, row, getField(e, StandardField.BOOKTITLE));
                 addTableCell(result, row, getField(e, StandardField.CHAPTER));
                 addTableCell(result, row, getField(e, StandardField.DAY));
@@ -171,9 +170,8 @@ public Document getDOMrepresentation() {
                         row,
                         getField(
                                 e,
-                                StandardField
-                                        .EDITOR)); // new AuthorLastFirst().format(getField(e,
-                                                   // StandardField.EDITOR_FIELD)));
+                                StandardField.EDITOR)); // new AuthorLastFirst().format(getField(e,
+                // StandardField.EDITOR_FIELD)));
                 addTableCell(result, row, getField(e, StandardField.HOWPUBLISHED));
                 addTableCell(result, row, getField(e, StandardField.INSTITUTION));
                 addTableCell(result, row, getField(e, StandardField.JOURNAL));

src/main/java/org/jabref/logic/exporter/TemplateExporter.java

@@ -230,7 +230,7 @@ public void export(
 
         if (entries
                 .isEmpty()) { // Do not export if no entries to export -- avoids exports with only
-                              // template text
+            // template text
             return;
         }
 

src/main/java/org/jabref/logic/formatter/bibtexfields/LatexCleanupFormatter.java

@@ -58,7 +58,7 @@ public String format(String oldString) {
                         .matcher(newValue)
                         .replaceAll(
                                 "\\$$1"); // Move numbers, possibly with operators +, -, or /,  left
-                                          // of $ into the equation
+        // of $ into the equation
         newValue =
                 MOVE_NUMBERS_RIGHT_INTO_EQUATION
                         .matcher(newValue)
@@ -72,9 +72,8 @@ public String format(String oldString) {
         newValue =
                 ESCAPE_PERCENT_SIGN_ONCE
                         .matcher(newValue)
-                        .replaceAll(
-                                "$1\\\\%"); // escape %, but do not escapee \% again,  used for
-                                            // comments in TeX
+                        .replaceAll("$1\\\\%"); // escape %, but do not escapee \% again,  used for
+        // comments in TeX
 
         return newValue;
     }

src/main/java/org/jabref/logic/importer/fileformat/PdfContentImporter.java

@@ -230,7 +230,7 @@ Optional<BibEntry> getEntryFromPDFContent(String firstpageContents, String lineS
 
         lineIndex =
                 0; // to prevent array index out of bounds exception on second run we need to reset
-                   // i to zero
+        // i to zero
 
         proceedToNextNonEmptyLine();
         if (lineIndex >= lines.length) {
@@ -385,9 +385,8 @@ Optional<BibEntry> getEntryFromPDFContent(String firstpageContents, String lineS
                 if (posWithEditor > curString.length()) {
                     curString =
                             curString.substring(
-                                    posWithEditor
-                                            - 2); // we don't have any spaces after Eds so we
-                                                  // substract the 2
+                                    posWithEditor - 2); // we don't have any spaces after Eds so we
+                    // substract the 2
                 } else {
                     curString = curString.substring(posWithEditor);
                 }

src/main/java/org/jabref/logic/net/ssl/TrustStoreManager.java

@@ -215,9 +215,8 @@ private static X509TrustManager findDefaultTrustManager(KeyStore keyStore)
             throws NoSuchAlgorithmException, KeyStoreException {
         TrustManagerFactory tmf =
                 TrustManagerFactory.getInstance(TrustManagerFactory.getDefaultAlgorithm());
-        tmf.init(
-                keyStore); // If keyStore is null, tmf will be initialized with the default trust
-                           // store
+        tmf.init(keyStore); // If keyStore is null, tmf will be initialized with the default trust
+        // store
 
         for (TrustManager tm : tmf.getTrustManagers()) {
             if (tm instanceof X509TrustManager manager) {

src/main/java/org/jabref/logic/util/io/DatabaseFileLookup.java

@@ -64,11 +64,8 @@ private List<Path> parseFileField(BibEntry entry) {
         Objects.requireNonNull(entry);
 
         return entry.getFiles().stream()
-                .filter(
-                        file ->
-                                !file
-                                        .isOnlineLink()) // Do not query external file links (huge
-                                                         // performance leak)
+                .filter(file -> !file.isOnlineLink()) // Do not query external file links (huge
+                // performance leak)
                 .map(file -> file.findIn(possibleFilePaths))
                 .filter(Optional::isPresent)
                 .map(Optional::get)

src/main/java/org/jabref/logic/xmp/XmpUtilReader.java

@@ -33,7 +33,7 @@ public XmpUtilReader() {
         System.setProperty(
                 "sun.java2d.cmm",
                 "sun.java2d.cmm.kcms.KcmsServiceProvider"); // To get higher rendering speed on java
-                                                            // 8 oder 9 for images
+        // 8 oder 9 for images
     }
 
     /**

src/main/java/org/jabref/model/ChainNode.java

@@ -23,7 +23,7 @@
  */
 @SuppressWarnings(
         "unchecked") // We use some explicit casts of the form "(T) this". The constructor ensures
-                     // that this cast is valid.
+// that this cast is valid.
 public abstract class ChainNode<T extends ChainNode<T>> {
 
     /**

src/main/java/org/jabref/model/entry/Date.java

@@ -87,7 +87,7 @@ public class Date {
                         + // covers YYYY.MM.DD, YYYY.M.DD, YYYY.MM.D, YYYY.M.D
                         "(January|February|March|April|May|June|July|August|September|"
                         + "October|November|December) \\d{1,2}, \\d{4}"; // covers Month DD, YYYY &
-                                                                         // Month D, YYYY
+        // Month D, YYYY
     }
 
     private final TemporalAccessor date;
@@ -197,7 +197,7 @@ public static Optional<Date> parse(String dateString) {
                         "\\d{1,4}-\\d{1,2} BC/\\d{1,4}-\\d{1,2} BC|"
                         + // 5 AD/10 AD and 0005 AD/0010 AD
                         "\\d{1,4}-\\d{1,2} AD/\\d{1,4}-\\d{1,2} AD" // 5 AD/10 AD and 0005 AD/0010
-                                                                    // AD
+                // AD
                 )) {
             try {
                 String[] strDates = dateString.split("/");
@@ -220,7 +220,7 @@ public static Optional<Date> parse(String dateString) {
                         "\\d{1,4}-\\d{1,2} BC / \\d{1,4}-\\d{1,2} BC|"
                         + // 5 AD/10 AD and 0005 AD/0010 AD
                         "\\d{1,4}-\\d{1,2} AD / \\d{1,4}-\\d{1,2} AD" // 5 AD/10 AD and 0005 AD/0010
-                                                                      // AD
+                // AD
                 )) {
             try {
                 String[] strDates = dateString.split(" / ");