Upgrade to Python 3.12 / Snakemake 8 #414
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Post-build checks | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| type: boolean | |
| description: "Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)" | |
| required: false | |
| default: false | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # macos-12 provides Intel builds, macos-14 provides M1 builds | |
| os: [ubuntu-latest, windows-latest, macos-12, macos-14] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| - uses: nanasess/setup-chromedriver@v2 | |
| with: | |
| chromedriver-version: "126.0.6478.185" | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: build | |
| miniforge-version: latest | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| python-version: 3.12 | |
| use-mamba: true | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v2 | |
| - name: install MacOS (M1) build dependencies | |
| shell: bash | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ] && [ "$RUNNER_ARCH" == "ARM64" ]; then | |
| brew install pango | |
| fi | |
| # setuptools needs to be available globally for the yarn build script | |
| - name: Install setuptools | |
| shell: bash -el {0} # required to sustain the conda environment | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install setuptools | |
| - name: build | |
| working-directory: ./electron-app | |
| shell: bash -el {0} | |
| run: | | |
| corepack enable | |
| ./build_deps.sh | |
| yarn install | |
| yarn | |
| yarn build | |
| yarn package | |
| - name: install docker MacOS (Intel chips) | |
| shell: bash -el {0} | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ] && [ "$RUNNER_ARCH" == "X64" ]; then | |
| brew install docker | |
| colima start | |
| fi | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| - name: tmate debugging | |
| uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| - name: postbuild-tests | |
| working-directory: ./electron-app | |
| shell: bash -el {0} | |
| run: | | |
| ./run_postbuild_tests.sh |