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kreft / iDynoMiCS Public

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kreft edited this page Jan 17, 2013 · 19 revisions

Welcome to the iDynoMiCS wiki!

Toggle table of contents Pages 54

Home
Agent growth
agent_State and agent_Sum Files
agentGrid
Agents
Automatic Update
BactAdaptable
BactEPS
Bacterium
Bug Reporting
Changes in Version 1.2
Conduct
Contributing Code to iDynomics
Converting XML output
Defining Solutes and Particle Types
Defining the Simulation
Defining the World
Detachment
Developers: Updating and Releasing a New Version
Diffusion Solver (Overview)
Downloading the code to run iDynomics
Eclipse
env_State and env_Sum Files
Frequently Asked Questions
Getting Java
iDynomics Tutorial
iDynoMiCS using Eclipse
ImageMagick
Issues and Suggestions
License
Matlab
Matlab Routines
ParticulateEPS
PDF of Wiki Tutorial
POV Ray Result Files
PovRay
Programming Style Conventions
Protocol Files
R Routines
Reactions
Required & Optional Software
Result Files
RunIdyno.py
Running a Simulation
Running iDynoMiCS
Solute Fields and Pressure Solvers
Species
specificArea
Starting from Previous State Files
Suggesting Future Improvements
The Bulk
The Computational Domain
Tutorial: Getting iDynoMiCS
Using Github with Eclipse

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