Skip to content

Commit

Permalink
Regenerated output
Browse files Browse the repository at this point in the history
  • Loading branch information
@JamesOwers
JamesOwers committed Jan 16, 2021
1 parent 1acc541 commit 9dc9cd1
Show file tree
Hide file tree
Showing 4 changed files with 57 additions and 23 deletions.
Binary file modified output/thesis.docx
View file
Binary file not shown.
19 changes: 14 additions & 5 deletions output/thesis.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -236,7 +236,8 @@ <h3 class="date">January 2015</h3>
<ul>
<li><a href="#introduction"><span class="toc-section-number">2.1</span> Introduction</a></li>
<li><a href="#the-middle"><span class="toc-section-number">2.2</span> The middle</a></li>
<li><a href="#conclusion"><span class="toc-section-number">2.3</span> Conclusion</a></li>
<li><a href="#a-complicated-math-equation"><span class="toc-section-number">2.3</span> A complicated math equation</a></li>
<li><a href="#conclusion"><span class="toc-section-number">2.4</span> Conclusion</a></li>
</ul></li>
<li><a href="#first-research-study-with-code"><span class="toc-section-number">3</span> First research study, with code</a>
<ul>
Expand Down Expand Up @@ -334,7 +335,7 @@ <h2 data-number="1.3" id="summary-of-chapters"><span class="header-section-numbe
For bold, add ** on either side of the text
For bold and italic, add _** on either side of the text
-->
<p>This is a brief outline of what went into each chapter, and a section which shows how to reference headers (which are labelled automatically for you). <strong>Chapter </strong> shows how to use citations and how to reference section headers. <strong>Chapter </strong> shows how use and reference equations. <strong>Chapter </strong> shows how to use and reference code. <strong>Chapter </strong> shows how to use, reference, and resize pdf and jpg figures. <strong>Chapter </strong> shows how to use and reference tables. <strong>Chapter </strong> is truly revolutionary (but shows nothing functional). <strong>Appendix </strong> shows how to add chapters which are not numbered, as does <strong>Appendix </strong>. See the base <a href="https://github.com/tompollard/phd_thesis_markdown/blob/master/README.md"><code>README.md</code></a> for how References are handled - leave <code>*_references.md</code> alone, and provide it to <code>pandoc</code> last.</p>
<p>This is a brief outline of what went into each chapter, and a section which shows how to reference headers (which are labelled automatically for you). <strong><a href="#introduction-with-a-citation">Chapter 1</a></strong> shows how to use citations and how to reference section headers. <strong><a href="#literature-review-with-maths">Chapter 2</a></strong> shows how use and reference equations. <strong><a href="#first-research-study-with-code">Chapter 3</a></strong> shows how to use and reference code. <strong><a href="#research-containing-a-figure">Chapter 4</a></strong> shows how to use, reference, and resize pdf and jpg figures. <strong><a href="#research-containing-a-table">Chapter 5</a></strong> shows how to use and reference tables. <strong><a href="#final-research-study">Chapter 6</a></strong> is truly revolutionary (but shows nothing functional). <strong><a href="#appendix-1-some-extra-stuff">Appendix 1</a></strong> shows how to add chapters which are not numbered, as does <strong><a href="#appendix-2-some-more-extra-stuff">Appendix 2</a></strong>. See the base <a href="https://github.com/tompollard/phd_thesis_markdown/blob/master/README.md"><code>README.md</code></a> for how References are handled - leave <code>*_references.md</code> alone, and provide it to <code>pandoc</code> last.</p>
<p>Proin faucibus nibh sit amet augue blandit varius.</p>
<h1 data-number="2" id="literature-review-with-maths"><span class="header-section-number">2</span> Literature review, with maths</h1>
<!--
Expand All @@ -348,8 +349,16 @@ <h2 data-number="2.2" id="the-middle"><span class="header-section-number">2.2</s
<p>This is the literature review. Nullam quam odio, volutpat ac ornare quis, vestibulum nec nulla. Aenean nec dapibus in mL/min<sup>-1</sup>. Mathematical formula can be inserted using Latex and can be automatically numbered:</p>
<p><span id="eq:my_equation" class="eqnos"><span class="math inline"><em>f</em>(<em>x</em>) = <em>a</em><em>x</em><sup>3</sup> + <em>b</em><em>x</em><sup>2</sup> + <em>c</em><em>x</em> + <em>d</em></span><span class="eqnos-number">(1)</span></span> </p>
<p>Nunc eleifend, ex a luctus porttitor, felis ex suscipit tellus, ut sollicitudin sapien purus in libero. Nulla blandit eget urna vel tempus. Praesent fringilla dui sapien, sit amet egestas leo sollicitudin at.</p>
<p>Later on in the text, you can reference Equation and its mind-blowing ramifications. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Sed faucibus pulvinar volutpat. Ut semper fringilla erat non dapibus. Nunc vitae felis eget purus placerat finibus laoreet ut nibh.</p>
<h2 data-number="2.3" id="conclusion"><span class="header-section-number">2.3</span> Conclusion</h2>
<p>Later on in the text, you can reference Equation <a href="#eq:my_equation">1</a> and its mind-blowing ramifications. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Sed faucibus pulvinar volutpat. Ut semper fringilla erat non dapibus. Nunc vitae felis eget purus placerat finibus laoreet ut nibh.</p>
<h2 data-number="2.3" id="a-complicated-math-equation"><span class="header-section-number">2.3</span> A complicated math equation</h2>
<p>The following raw text in markdown behind Equation <a href="#eq:my_complicated_equation">2</a> shows that you can fall back on if it is more convenient for you. Note that this will only be rendered in <code>thesis.pdf</code></p>
<p><span id="eq:my_complicated_equation" class="eqnos"><span class="math display">$$
\begin{aligned}
\hat{\theta}_g = \argmin_{\theta_g} \Big\{ - &amp;\sum^{N}_{n=1}\Big( 1-\mathbb{1}[f(\pmb x^{(n)})]\Big)\log f\Big(\pmb x^{(n)} \\
&amp;+ g(\pmb x^{(n)};\theta_g)\Big) + \lambda|g(\pmb x^{(n)};\theta_g)|_2 \Big\} \ ,
\end{aligned}
$$</span><span class="eqnos-number">(2)</span></span> </p>
<h2 data-number="2.4" id="conclusion"><span class="header-section-number">2.4</span> Conclusion</h2>
<p>This is the conclusion. Donec pulvinar molestie urna eu faucibus. In tristique ut neque vel eleifend. Morbi ut massa vitae diam gravida iaculis. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas.</p>
<!-- Insert an unordered list -->
<ul>
Expand All @@ -369,7 +378,7 @@ <h3 data-number="3.2.1" id="subsection-1-with-example-code-block"><span class="h
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="cf">if</span> mood <span class="op">==</span> <span class="st">&#39;happy&#39;</span>:</span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a> <span class="bu">print</span>(<span class="st">&quot;I am a happy robot&quot;</span>)</span></code></pre></div>
<h3 data-number="3.2.2" id="subsection-2"><span class="header-section-number">3.2.2</span> Subsection 2</h3>
<p>By running the code in Section , we solved AI completely. This is the second part of the methodology. Proin tincidunt odio non sem mollis tristique. Fusce pharetra accumsan volutpat. In nec mauris vel orci rutrum dapibus nec ac nibh. Praesent malesuada sagittis nulla, eget commodo mauris ultricies eget. Suspendisse iaculis finibus ligula.</p>
<p>By running the code in <a href="#subsection-1-with-example-code-block">Section Subsection 1 with example code block</a>, we solved AI completely. This is the second part of the methodology. Proin tincidunt odio non sem mollis tristique. Fusce pharetra accumsan volutpat. In nec mauris vel orci rutrum dapibus nec ac nibh. Praesent malesuada sagittis nulla, eget commodo mauris ultricies eget. Suspendisse iaculis finibus ligula.</p>
<!--
Comments can be added like this.
-->
Expand Down
Binary file modified output/thesis.pdf
View file
Binary file not shown.
61 changes: 43 additions & 18 deletions output/thesis.tex
View file
Original file line number Diff line number Diff line change
Expand Up @@ -288,6 +288,10 @@
\usepackage{graphicx}
\usepackage{rotating}

% Custom math
\usepackage{bbold}
\DeclareMathOperator*{\argmin}{\arg\!\min}

\begin{document}


Expand Down Expand Up @@ -474,19 +478,23 @@ \section{Summary of chapters}\label{summary-of-chapters}}

This is a brief outline of what went into each chapter, and a section
which shows how to reference headers (which are labelled automatically
for you). \textbf{Chapter \ref{introduction-with-a-citation}} shows how
to use citations and how to reference section headers. \textbf{Chapter
\ref{literature-review-with-maths}} shows how use and reference
equations. \textbf{Chapter \ref{first-research-study-with-code}} shows
how to use and reference code. \textbf{Chapter
\ref{research-containing-a-figure}} shows how to use, reference, and
resize pdf and jpg figures. \textbf{Chapter
\ref{research-containing-a-table}} shows how to use and reference
tables. \textbf{Chapter \ref{final-research-study}} is truly
revolutionary (but shows nothing functional). \textbf{Appendix
\ref{appendix-1-some-extra-stuff}} shows how to add chapters which are
not numbered, as does \textbf{Appendix
\ref{appendix-2-some-more-extra-stuff}}. See the base
for you).
\textbf{\protect\hyperlink{introduction-with-a-citation}{Chapter 1}}
shows how to use citations and how to reference section headers.
\textbf{\protect\hyperlink{literature-review-with-maths}{Chapter 2}}
shows how use and reference equations.
\textbf{\protect\hyperlink{first-research-study-with-code}{Chapter 3}}
shows how to use and reference code.
\textbf{\protect\hyperlink{research-containing-a-figure}{Chapter 4}}
shows how to use, reference, and resize pdf and jpg figures.
\textbf{\protect\hyperlink{research-containing-a-table}{Chapter 5}}
shows how to use and reference tables.
\textbf{\protect\hyperlink{final-research-study}{Chapter 6}} is truly
revolutionary (but shows nothing functional).
\textbf{\protect\hyperlink{appendix-1-some-extra-stuff}{Appendix 1}}
shows how to add chapters which are not numbered, as does
\textbf{\protect\hyperlink{appendix-2-some-more-extra-stuff}{Appendix
2}}. See the base
\href{https://github.com/tompollard/phd_thesis_markdown/blob/master/README.md}{\texttt{README.md}}
for how References are handled - leave \texttt{*\_references.md} alone,
and provide it to \texttt{pandoc} last.
Expand Down Expand Up @@ -526,6 +534,22 @@ \section{The middle}\label{the-middle}}
faucibus pulvinar volutpat. Ut semper fringilla erat non dapibus. Nunc
vitae felis eget purus placerat finibus laoreet ut nibh.

\hypertarget{a-complicated-math-equation}{%
\section{A complicated math
equation}\label{a-complicated-math-equation}}

The following raw text in markdown behind Equation
\ref{eq:my_complicated_equation} shows that you can fall back on
\LaTeX if it is more convenient for you. Note that this will only be
rendered in \texttt{thesis.pdf}

\begin{equation}
\begin{aligned}
\hat{\theta}_g = \argmin_{\theta_g} \Big\{ - &\sum^{N}_{n=1}\Big( 1-\mathbb{1}[f(\pmb x^{(n)})]\Big)\log f\Big(\pmb x^{(n)} \\
&+ g(\pmb x^{(n)};\theta_g)\Big) + \lambda|g(\pmb x^{(n)};\theta_g)|_2 \Big\} \ ,
\end{aligned}
\label{eq:my_complicated_equation}\end{equation}

\hypertarget{conclusion}{%
\section{Conclusion}\label{conclusion}}

Expand Down Expand Up @@ -589,11 +613,12 @@ \subsection{Subsection 1 with example code
\hypertarget{subsection-2}{%
\subsection{Subsection 2}\label{subsection-2}}

By running the code in Section
\ref{subsection-1-with-example-code-block}, we solved AI completely.
This is the second part of the methodology. Proin tincidunt odio non sem
mollis tristique. Fusce pharetra accumsan volutpat. In nec mauris vel
orci rutrum dapibus nec ac nibh. Praesent malesuada sagittis nulla, eget
By running the code in
\protect\hyperlink{subsection-1-with-example-code-block}{Section
Subsection 1 with example code block}, we solved AI completely. This is
the second part of the methodology. Proin tincidunt odio non sem mollis
tristique. Fusce pharetra accumsan volutpat. In nec mauris vel orci
rutrum dapibus nec ac nibh. Praesent malesuada sagittis nulla, eget
commodo mauris ultricies eget. Suspendisse iaculis finibus ligula.

\hypertarget{results}{%
Expand Down

0 comments on commit 9dc9cd1

Please sign in to comment.