This project contains all scripts and figures in JuloVelo master thesis
Mouse E18 brain dataset can be download from https://www.10xgenomics.com/datasets/fresh-embryonic-e-18-mouse-brain-5-k-1-standard-2-0-0 and https://github.com/welch-lab/MultiVelo/blob/main/Examples/MultiVelo_Demo.ipynb
There are some file what we need
10X_multiome_mouse_brain.loom from MultiVelo
cell_annotations.tsv from MultiVelo
filtered_bc_matrix from 10x website
secondary analysis outputs from 10x website
ATAC peak annotation from 10x website
Mouse skin dataset can be download from https://github.com/welch-lab/MultiVelo/blob/main/Examples/MultiVelo_Fig4.ipynb
The other datasets are provided by scVelo package