Skip to content

kuanchiun/JuloVelo_master_thesis

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
 
 
 
 
 
 
 
 

Repository files navigation

JuloVelo master thesis

This project contains all scripts and figures in JuloVelo master thesis

Extra

Mouse E18 brain dataset can be download from https://www.10xgenomics.com/datasets/fresh-embryonic-e-18-mouse-brain-5-k-1-standard-2-0-0 and https://github.com/welch-lab/MultiVelo/blob/main/Examples/MultiVelo_Demo.ipynb

There are some file what we need

10X_multiome_mouse_brain.loom from MultiVelo
cell_annotations.tsv from MultiVelo
filtered_bc_matrix from 10x website
secondary analysis outputs from 10x website
ATAC peak annotation from 10x website

Mouse skin dataset can be download from https://github.com/welch-lab/MultiVelo/blob/main/Examples/MultiVelo_Fig4.ipynb

The other datasets are provided by scVelo package

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published