Move dj_config setup to tutorial_pipeline.py

element_array_ephys/__init__.py

@@ -1,19 +1 @@
-import os
-import datajoint as dj
-
-if "custom" not in dj.config:
-    dj.config["custom"] = {}
-
-# overwrite dj.config['custom'] values with environment variables if available
-
-dj.config["custom"]["database.prefix"] = os.getenv(
-    "DATABASE_PREFIX", dj.config["custom"].get("database.prefix", "")
-)
-
-dj.config["custom"]["ephys_root_data_dir"] = os.getenv(
-    "EPHYS_ROOT_DATA_DIR", dj.config["custom"].get("ephys_root_data_dir", "")
-)
-
-db_prefix = dj.config["custom"].get("database.prefix", "")
-
 from . import ephys_acute as ephys

notebooks/tutorial_pipeline.py

@@ -1,17 +1,33 @@
+import os
+import pathlib
 import datajoint as dj
 from element_animal import subject
 from element_animal.subject import Subject
-from element_array_ephys import db_prefix, probe, ephys_acute as ephys
+from element_array_ephys import probe, ephys_acute as ephys
 from element_lab import lab
 from element_lab.lab import Lab, Location, Project, Protocol, Source, User
 from element_lab.lab import Device as Equipment
 from element_lab.lab import User as Experimenter
 from element_session import session_with_datetime as session
 from element_session.session_with_datetime import Session
 import element_interface
-import pathlib
 
 
+if "custom" not in dj.config:
+    dj.config["custom"] = {}
+
+# overwrite dj.config['custom'] values with environment variables if available
+
+dj.config["custom"]["database.prefix"] = os.getenv(
+    "DATABASE_PREFIX", dj.config["custom"].get("database.prefix", "")
+)
+
+dj.config["custom"]["ephys_root_data_dir"] = os.getenv(
+    "EPHYS_ROOT_DATA_DIR", dj.config["custom"].get("ephys_root_data_dir", "")
+)
+
+db_prefix = dj.config["custom"].get("database.prefix", "")
+
 # Declare functions for retrieving data
 def get_ephys_root_data_dir():
     """Retrieve ephys root data directory."""