update CI

labgem · Oct 15, 2024 · 0ed382a · 0ed382a
1 parent 498b033
commit 0ed382a
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -139,6 +139,7 @@ jobs:
       shell: bash -l {0}
       run: |
         cd testingDataset
+        cat myannopang/gene_families.tsv | cut -f1,2,4 > clusters.tsv 
         ppanggolin panrgp --anno genomes.gbff.list --cluster clusters.tsv --output readclusterpang  --cpu $NUM_CPUS 
         ppanggolin annotate --anno genomes.gbff.list --output readclusters --cpu $NUM_CPUS
         awk 'BEGIN{FS=OFS="\t"} {$1 = $1 OFS $1} 1' clusters.tsv > clusters_with_reprez.tsv;

diff --git a/testingDataset/expected_info_files/checksum.txt b/testingDataset/expected_info_files/checksum.txt
@@ -2,4 +2,4 @@
 9d6219523e890b08c467c936590b37436e915840a797ea161c9707041c3b821c  stepbystep/gene_families.tsv
 5cb88afbc1a49e7d21531d36d5ee3471a87834f4bb82578347dc92231ba0a452  readclusterpang/gene_families.tsv
 5cb88afbc1a49e7d21531d36d5ee3471a87834f4bb82578347dc92231ba0a452  myannopang/gene_families.tsv
-41511d7c482c0c400a504d5c564605427081917e54aee1e5f37ffda220d2cdb9  test_config/gene_families.tsv
+d9698f054a14d8fcea35542c7d8338ea73f6d128bd287adfa01e99be40c80dc4  test_config/gene_families.tsv