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LACDR-CDS - Beltman lab

Assoc. Prof. Dr. Joost Beltman is head of the Image-based Computational Biology group at the LACDR Division of Cell Systems and Drug Safety (CDS)

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  1. basic-programming-in-drug-discovery basic-programming-in-drug-discovery Public

    Course materials for basic programming in drug discovery

    Jupyter Notebook 4 3

  2. cellprofiler-plugins cellprofiler-plugins Public

    1

  3. Leegwater_lipidomics_normalization Leegwater_lipidomics_normalization Public

    Code to generate figures for "Normalization strategies for lipidome data in cell line panels" (Leegwater et al. 2024)

    R 1

  4. ClonalGrowthSimulator_SSA ClonalGrowthSimulator_SSA Public

    Gillespie simulator of clonal growth

    C++ 1

  5. ClonalGrowthSimulator_ABM ClonalGrowthSimulator_ABM Public

    Agent based simulator of clonal growth

    C++

  6. wmc_imagej wmc_imagej Public

    Macro to use WMC segment in batch mode in Fiji

Repositories

Showing 10 of 24 repositories
  • Leegwater_lipidomics_normalization Public

    Code to generate figures for "Normalization strategies for lipidome data in cell line panels" (Leegwater et al. 2024)

    lacdr-tox/Leegwater_lipidomics_normalization’s past year of commit activity
    R 1 MIT 0 0 0 Updated Dec 9, 2024
  • heldring-E2S-modeling Public

    Data and code used for the manuscript titled "Interdependency of estradiol-mediated ERα activation and subsequent PR and GREB1 induction to control cell cycle progression"

    lacdr-tox/heldring-E2S-modeling’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 14, 2024
  • FunGen2024 Public

    Code to test if DESeq2 can be run for the bachelor course Functional Genomics

    lacdr-tox/FunGen2024’s past year of commit activity
    0 0 0 0 Updated Jun 21, 2024
  • Sharma_Nitrofurantoin_PBPKmodeling Public
    lacdr-tox/Sharma_Nitrofurantoin_PBPKmodeling’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 23, 2023
  • beltman-DRAGbarcode-cleanup Public
    lacdr-tox/beltman-DRAGbarcode-cleanup’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 23, 2023
  • lems-emt-pdl1-models-figures Public

    Model plus code to generate figures for Lems et al. 2023. Tumor-Mediated Immunosuppression and Cytokine Spreading Affects the Relation Between EMT and PD-L1 Status. doi: 10.3389/fimmu.2023.1219669

    lacdr-tox/lems-emt-pdl1-models-figures’s past year of commit activity
    Component Pascal 0 CC-BY-4.0 0 0 0 Updated Jul 4, 2023
  • LAG_TIM_BIOMARKERS Public
    lacdr-tox/LAG_TIM_BIOMARKERS’s past year of commit activity
    R 0 0 0 0 Updated Mar 28, 2023
  • H5CellProfiler Public

    H5CellProfiler: User-friendly high-content CellProfiler imaging data analysis in R

    lacdr-tox/H5CellProfiler’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 13, 2023
  • burger-emt-pdl1-models-figures Public

    Models and code to generate figures for Burger et al. 2022. Bidirectional Crosstalk Between Epithelial-Mesenchymal Plasticity and IFNγ-Induced PD-L1 Expression Promotes Tumor Progression. bioRxiv. https://doi.org/10.1101/2022.02.03.478950

    lacdr-tox/burger-emt-pdl1-models-figures’s past year of commit activity
    Component Pascal 0 CC-BY-4.0 0 0 0 Updated Aug 30, 2022
  • heldring-spatial-liver-model Public

    Models, code and data to reproduce the results from the spatial liver model manuscript.

    lacdr-tox/heldring-spatial-liver-model’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 8, 2022
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