feret max diameter

lambda-science · Nov 30, 2022 · 51a21a3 · 51a21a3
1 parent cefd296
commit 51a21a3
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -168,4 +168,5 @@ debug_data/
 !binary_mask_fluo.tif
 !nuclei.tif
 !cytoplasm.tif
-!binary_mask_sdh.tif
+!binary_mask_sdh.tif
+*.ipynb
diff --git a/myoquant/src/HE_analysis.py b/myoquant/src/HE_analysis.py
@@ -30,6 +30,7 @@ def extract_ROIs(histo_img, index, cellpose_df, mask_stardist):
             "bbox",
             "image",
             "perimeter",
+            "feret_diameter_max",
         ],
     )
     df_nuc_single = pd.DataFrame(props_nuc_single)
@@ -181,6 +182,7 @@ def run_he_analysis(image_ndarray, mask_cellpose, mask_stardist, eccentricity_th
             "bbox",
             "image",
             "perimeter",
+            "feret_diameter_max",
         ],
     )
     df_cellpose = pd.DataFrame(props_cellpose)

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "myoquant"
-version = "0.2.0"
+version = "0.2.1"
 description = "MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images."
 authors = ["Corentin Meyer <[email protected]>"]
 maintainers = ["Corentin Meyer <[email protected]>"]