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Releases: laminlabs/bionty-base
Releases Β· laminlabs/bionty-base
0.1.7
What's Changed
- β¨ Use pronto to access cell type ontology by @sunnyosun in laminlabs/bionty#103
Full Changelog: laminlabs/bionty@0.1.6...0.1.7
0.1.6
What's Changed
- π Fixed duplicated index during curate by @sunnyosun in laminlabs/bionty#100
Full Changelog: laminlabs/bionty@0.1.5...0.1.6
0.1.5
What's Changed
- β¨ Added
lookup
module for lookups by @sunnyosun in laminlabs/bionty#98
Full Changelog: laminlabs/bionty@0.1.4...0.1.5
0.1.4
What's Changed
- π₯ Removed duplicated code in lookup by @sunnyosun in laminlabs/bionty#97
Full Changelog: laminlabs/bionty@0.1.3...0.1.4
0.1.3
What's Changed
- π₯ Switched logger to use lamin-logger by @sunnyosun in laminlabs/bionty#95
- β¨ Added shortcuts for looking up static sets by @sunnyosun in laminlabs/bionty#96
Full Changelog: laminlabs/bionty@0.1.2...0.1.3
0.1.2
What's Changed
- β¨ Maps alias when using gene symbols by @sunnyosun in laminlabs/bionty#92
- β¨ Allow to input columns with non-standard names by @sunnyosun in laminlabs/bionty#93
Full Changelog: laminlabs/bionty@0.1.1...0.1.2
0.1.0
What's Changed
- π Link guides in docs by @falexwolf in laminlabs/bionty#22
- π Change format of license file by @falexwolf in laminlabs/bionty#23
- π¨ Refactored repo by @sunnyosun in laminlabs/bionty#27
- π§βπ» Added notes to explain the difference in ensembl and hgnc references by @sunnyosun in laminlabs/bionty#29
- π Set biomart to False by default, updated ensembl notes by @sunnyosun in laminlabs/bionty#30
- β¨ Introduced Celltype by @sunnyosun in laminlabs/bionty#34
- π¨ Added an ontology manager by @sunnyosun in laminlabs/bionty#35
- β¨ Introduced Disease with mondo by @sunnyosun in laminlabs/bionty#36
- β¨ Placeholder for Tissue by @sunnyosun in laminlabs/bionty#38
- π¨ Implement an initial .standardize in the Ontology manager by @sunnyosun in laminlabs/bionty#40
- π Fix standardize to work on any iterables by @sunnyosun in laminlabs/bionty#41
- π Fix gene ID columns by @sunnyosun in laminlabs/bionty#42
- π Fix gn id fields by @sunnyosun in laminlabs/bionty#43
- β¨ Propose new design of the entity APIs by @sunnyosun in laminlabs/bionty#44
- π· Track changes by @falexwolf in laminlabs/bionty#46
- π¨ Made ensembl its own class by @sunnyosun in laminlabs/bionty#45
- π· Update format of changelog by @falexwolf in laminlabs/bionty#49
- π Rename taxon to species by @sunnyosun in laminlabs/bionty#50
- β»οΈ Refactored species by @sunnyosun in laminlabs/bionty#51
- π Fix docs build warnings/errors by @falexwolf in laminlabs/bionty#52
- β‘ Speed up requests with async by @sunnyosun in laminlabs/bionty#53
- β»οΈ Refactored species by @sunnyosun in laminlabs/bionty#54
- β»οΈ Refactored species by @sunnyosun in laminlabs/bionty#55
- π¨
Species
class by default taks acommon_name
by @sunnyosun in laminlabs/bionty#56 - π Prettified ontology docstring by @sunnyosun in laminlabs/bionty#58
- β¨ Added static class
gene
by @sunnyosun in laminlabs/bionty#59 - π Rewrite landing page and rename tasks by @falexwolf in laminlabs/bionty#61
- π Renamed Celltype to CellType, fixed gene Entry fields by @sunnyosun in laminlabs/bionty#62
- β‘ Implemented pickling of dataclasses, refactored static class into
.dataclass
by @sunnyosun in laminlabs/bionty#65 - π₯ Remove versioneer by @falexwolf in laminlabs/bionty#66
- π₯ Improved quickstart, implemented .dataclass everywhere by @sunnyosun in laminlabs/bionty#67
Full Changelog: laminlabs/bionty@0.0.7...0.1.0