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Releases: laminlabs/bionty-base
Releases · laminlabs/bionty-base
Release 0.38.0
What's Changed
- 👷 Deploy docs to cloudflare by @falexwolf in #579
- ✨ New ontology: Protein-uniprot-2024-03 by @sunnyosun in #582
Full Changelog: 0.37.3...0.38.0
Release 0.37.3
What's Changed
- Add new ICD 10-CM by @Zethson in #554
- Remove functions from repr by @Zethson in #559
- Pandas 3.0.0 fix by @Zethson in #560
- Use more general ICD website as source by @Zethson in #561
- password is deprecated by @falexwolf in #562
- Update BFXPipeline by @Zethson in #564
- 🚚 Move out sources.yml by @sunnyosun in #565
- ✨ New ontology: Drug-dron-2024-03-02 by @Zethson in #566
- ✨ New ontology: Pathway-pw-7.82 by @Zethson in #567
- ✨ New ontology: Phenotype-zp-2024-01-22 by @Zethson in #568
- ✨ New Ontology: Phenotype-mp-2024-02-07 by @Zethson in #569
- ✨ New Ontology: Phenotype-hp-2024-03-06 by @Zethson in #570
- ✨ New Ontology: Disease-DOID-2024-01-31 by @Zethson in #571
- ✨ New Ontology: Disease-mondo-2024-02-06 by @Zethson in #572
- ✨ New ontology: Organism-ensembl-release-111 and Organism-ensembl-release-112 by @sunnyosun in #574
- ✨ New Ontology: Tissue-uberon-2024-02-20 by @Zethson in #575
- ✨ New ontology: CellType-cl-2024-02-13 by @Zethson in #576
- ✨ New ontology: ExperimentalFactor-efo-3.63 by @Zethson in #577
- ✨ New ontology: Gene-ensembl-111/112 by @Zethson in #578
Full Changelog: 0.37.1...0.37.3
Release 0.37.1
What's Changed
- 📝 Added validate example to docstring by @sunnyosun in #542
- Fix reset message by @Zethson in #545
- 🐛 Catch ClientError by @Koncopd in #549
- Switch to uv for CI by @Zethson in #552
- 🔇 Remove py version warning by @sunnyosun in #553
Full Changelog: 0.37.0...0.37.1
Release 0.37.0
What's Changed
- Add ICD ontology by @Zethson in #538
- 🚚 Rename repo to
bionty-base
by @sunnyosun in #539
Full Changelog: 0.36.0...0.37.0
Release 0.36.0
What's Changed
- 🚚 Move bionty search & lookup guide to lamindb by @falexwolf in https://github.com/laminlabs/bionty/pull/532
- Add mysql-connector-python requirement to EnsemblGene by @Zethson in https://github.com/laminlabs/bionty/pull/534
- ✨ Replace pre-commit with Ruff config by @Zethson in https://github.com/laminlabs/bionty/pull/535
- 🚚 Rename
Bionty
toPublicOntology
class by @sunnyosun in https://github.com/laminlabs/bionty/pull/536
Full Changelog: laminlabs/bionty@0.35.2...0.36.0
0.35.2
What's Changed
- ✨ Enabled ID conversion via return_field by @sunnyosun in https://github.com/laminlabs/bionty/pull/530
Full Changelog: laminlabs/bionty@0.35.1...0.35.2
0.35.0
What's Changed
- 🍱 Update a few sources by @sunnyosun in https://github.com/laminlabs/bionty/pull/526
Full Changelog: laminlabs/bionty@0.34.3...0.35.0
0.34.3
What's Changed
- 🚚 Relocate bionty.lock to versionsdir by @sunnyosun in https://github.com/laminlabs/bionty/pull/525
Full Changelog: laminlabs/bionty@0.34.2...0.34.3
0.34.2
What's Changed
- 🔧 Using env variables for versionsdir by @sunnyosun in https://github.com/laminlabs/bionty/pull/524
Full Changelog: laminlabs/bionty@0.34.1...0.34.2
0.34.1
What's Changed
- 📝 Streamline extend guide by @falexwolf in https://github.com/laminlabs/bionty/pull/522
- 🎨 Enable set versionsdir by @sunnyosun in https://github.com/laminlabs/bionty/pull/523
Full Changelog: laminlabs/bionty@0.34.0...0.34.1