update actions/checkout to v3 to suppress warning #244
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| # This file is based on examples in | |
| # https://docs.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions | |
| # Note that all the "sudo" commands here appear to cause a warning message | |
| # "sudo: setrlimit(RLIMIT_CORE): operation not permitted" | |
| # This appears to be a known harmless annoyance: | |
| # https://gitlab.alpinelinux.org/alpine/aports/-/issues/11122 | |
| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| CI: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| precision: ['single', 'double'] | |
| os: [ubuntu-latest, macos-latest] | |
| exclude: | |
| # macos with single has strange errors on github actions, even though it works on my laptop | |
| - precision: 'single' | |
| os: macos-latest | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os}}, ${{ matrix.precision }} precision | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| steps: | |
| # First print out lots of information. We do this in separate | |
| # "name" blocks because otherwise the output gets mixed together | |
| # in the github actions log. | |
| - name: Print user and group id | |
| run: | | |
| set -ex | |
| id | |
| - name: PWD | |
| run: | | |
| set -ex | |
| pwd | |
| - name: ls -l | |
| run: | | |
| set -ex | |
| ls -l | |
| - name: apt-get any needed packages | |
| if: "contains(matrix.os, 'ubuntu')" | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential openmpi-bin libopenmpi-dev liblapack-dev git cmake libnetcdf-dev libgsl-dev | |
| # If at some point we need the C++ wrapper for netcdf, it is libnetcdf-c++4-dev | |
| - name: Get any needed packages from homebrew | |
| if: "contains(matrix.os, 'macos')" | |
| run: | | |
| brew install netcdf | |
| brew install open-mpi | |
| brew install gsl | |
| - name: Print versions | |
| run: | | |
| which mpicc | |
| which mpiexec | |
| cmake --version | |
| - uses: actions/checkout@v3 | |
| # If we want submodules downloaded, uncomment the next 2 lines: | |
| #with: | |
| # submodules: true | |
| - name: Print CMake version | |
| run: cmake --version | |
| - name: which python3 after python setup | |
| run: which python3 | |
| - name: which pip after python setup | |
| run: pip --version | |
| - name: which pip using sudo | |
| run: sudo pip --version | |
| - name: which pip using sudo -E | |
| run: sudo -E pip --version | |
| - name: which python using sudo | |
| run: sudo which python3 | |
| - name: which python using sudo -E | |
| run: sudo -E which python3 | |
| - name: env after adding python | |
| run: env | |
| - name: CMake configure, double precision | |
| run: cmake . | |
| if: matrix.precision == 'double' | |
| - name: CMake configure, single precision | |
| run: cmake -DSINGLE=1 . | |
| if: matrix.precision == 'single' | |
| - name: Compile | |
| run: make | |
| - name: Run unit tests | |
| run: make test | |
| - name: Run examples, double precision | |
| run: | | |
| cd examples | |
| ./run_examples | |
| if: matrix.precision == 'double' | |
| - name: Run examples, single precision | |
| run: | | |
| cd examples | |
| ./run_examples_single | |
| if: matrix.precision == 'single' |