Fix bug of using a relative failed_logs_dir path on a cluster

lanl · Jan 8, 2019 · c809a5d · c809a5d
1 parent 677805d
commit c809a5d
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/pybnf/algorithms.py b/pybnf/algorithms.py
@@ -237,6 +237,10 @@ def _copy_log_files(self, failed_logs_dir):
     def run_simulation(self, debug=False, failed_logs_dir=''):
         """Runs the simulation and reads in the result"""
 
+        # Force absolute path for failed_logs_dir
+        if len(failed_logs_dir) > 0 and failed_logs_dir[0] != '/':
+            failed_logs_dir = self.home_dir + '/' + failed_logs_dir
+
         # The check here is in case dask decides to run the same job twice, both of them can complete.
         made_folder = False
         failures = 0