Fixed sort_bam description in meta.yml (#5462) #2
laramiellindseytest.yml
on: push
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nf-core-lint (subworkflows/fastq_align_bowtie2)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_align_dna)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_align_bwa)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_align_star)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_align_bamcmp_bwa)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_fastqc_umitools_fastp)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_align_mapad)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/quantify_pseudo_alignment)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_fastqc_umitools_trimgalore)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_taxonomic_profile_metaphlan)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/vcf_impute_glimpse)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/fastq_download_prefetch_fasterqdump_sratools)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (summarizedexperiment/summarizedexperiment)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (subworkflows/vcf_phase_shapeit5)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (svtyper/svtypersso)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (svync)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (svanalyzer/svbenchmark)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (tabix/bgzip)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (tabix/bgziptabix)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (tabix/tabix)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (taxonkit/name2taxid)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (toulligqc)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (tcoffee/tcs)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (tiddit/sv)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (tcoffee/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (trimgalore)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (trust4)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (tximeta/tximport)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (umicollapse)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (umitools/prepareforrsem)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (umitools/dedup)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (vcftools)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (umitools/extract)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wisecondorx/gender)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (velocyto)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wisecondorx/convert)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wisecondorx/newref)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wisecondorx/predict)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (xengsort/index)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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nf-core-lint (wittyer)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (ashlar, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (ashlar, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (ashlar, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (cellrangerarc/count, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (cellrangerarc/count, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk/unifiedgenotyper, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk/unifiedgenotyper, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk/unifiedgenotyper, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/bedtointervallist, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/bedtointervallist, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/bedtointervallist, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/cnnscorevariants, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/determinegermlinecontigploidy, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/cnnscorevariants, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/germlinecnvcaller, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/postprocessgermlinecnvcalls, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/postprocessgermlinecnvcalls, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (gatk4/germlinecnvcaller, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (proteus/readproteingroups, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (proteus/readproteingroups, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (proteus/readproteingroups, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (shapeit5/ligate, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (shapeit5/ligate, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (shapeit5/ligate, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (subworkflows/vcf_phase_shapeit5, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (subworkflows/vcf_phase_shapeit5, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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pytest (subworkflows/vcf_phase_shapeit5, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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confirm-pass
Process completed with exit code 1.
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Run tests
Strategy expansion exceeded 256 results for job 'nf-test'
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nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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