[FIX] fix version number (#61)

* fix version

* update dockerfile

* add bump version docker recipe

* validate citation cff file and add a validation workflow

* make dep/laynii_lib.cpp the ground truth for version number and update citation.cff from it

* fix wrongly changed cff-version: that is why it is a good thing to validate things in CI

.github/workflows/validation.yml

@@ -0,0 +1,23 @@
+name: validation
+
+on:
+  push:
+    branches: ['*']
+  pull_request:
+    branches: ['*']
+
+concurrency:
+  # only run one instance of this workflow at a time
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+
+  validate_cff:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Check whether the citation metadata from CITATION.cff is valid
+      uses: citation-file-format/[email protected]
+      with:
+        args: "--validate"

CITATION.cff

@@ -1,4 +1,4 @@
-cff-version: 1.1.0
+cff-version: 1.2.0
 message: "If you use this software, please cite it as below."
 authors:
   - family-names: Huber
@@ -60,6 +60,6 @@ authors:
     orcid: https://orcid.org/0000-0001-7761-3727
 
 title: "LayNii: A software suite for layer-fMRI"
-version: 2.1.1dev
-doi: https://doi.org/10.1016/j.neuroimage.2021.118091
+version: v2.3.0
+doi: 10.1016/j.neuroimage.2021.118091
 date-released: 2021-07-16

Dockerfile

@@ -1,6 +1,6 @@
 # Generated by: Neurodocker version 0.7.0+0.gdc97516.dirty
-# Latest release: Neurodocker version 0.8.0
-# Timestamp: 2022/03/29 17:10:18 UTC
+# Latest release: Neurodocker version 0.9.1
+# Timestamp: 2022/12/28 20:15:20 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -43,7 +43,7 @@ RUN export ND_ENTRYPOINT="/neurodocker/startup.sh" \
 
 ENTRYPOINT ["/neurodocker/startup.sh"]
 
-LABEL version="2.1.1dev"
+LABEL version="v2.3.0"
 
 RUN apt-get update -qq \
     && apt-get install -y -q --no-install-recommends \
@@ -80,7 +80,7 @@ RUN echo '{ \
     \n    [ \
     \n      "label", \
     \n      { \
-    \n        "version": "2.1.1dev" \
+    \n        "version": "v2.3.0" \
     \n      } \
     \n    ], \
     \n    [ \

Makefile

@@ -227,6 +227,16 @@ clean:
 tests:
 	cd test_data && bash ./tests.sh
 
+# =============================================================================
+# Maintenance
+
+bump_version:
+	VERSION=`cat dep/laynii_lib.cpp | grep LayNii | cut -c 21- | rev | cut -c 20- | rev` && \
+	echo "\nbumping to version: $$VERSION \n" && \
+	sed -i "s/^version:.*/version: $$VERSION/g" CITATION.cff
+	make Dockerfile
+
+
 # =============================================================================
 # Docker related content