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LayNii v1.5.6
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@layerfMRI layerfMRI released this 26 May 10:13
· 476 commits to master since this release
v1.5.6
298ebb4

Improvements

  • All programs now can handle absolute and relative input paths and save outputs in the input folder.
  • Input data type casts are tightened for all programs. This addresses many issues stemming from various integer data types (int8, int16, int32 etc.)
  • NaNs in input images are swapped with zeros. Addressing many issues coming from NaN voxels.
  • Lots of under the hood improvements and restructuring laying the groundwork for future additions.
  • [1.5.1] Introducing custom output path in LN_BOCO, LN_MP2RAGE_DNOISE, LN_FLOAT_ME, LN_SHORT_ME, LN_INT_ME. This flag will also be added to other programs as needed in the future.
  • [1.5.1] Fixing minor bugs introduced in 1.5.0 after restructuring.
  • [1.5.2] Added support for .nii.gz read/write.
  • [1.5.3] Fix displayed version number in welcome message.
  • [1.5.4] Add rim_M.nii as a synthetic 2D test image.
  • [1.5.5] Add equi-distant and equi-volume metrics as additional default outputs to LN2_LAYERS.
  • [1.5.6] Outputs are now changed to use suffix tags instead of prefix in ALL programs.
  • [1.5.6] Nii.gz bug fix for windows
  • [1.5.6] The testing files and scripts are updated to match the new options after v1.5
  • [1.5.6] LN_GRADSMOOTH_ITER is added to avoid signal smoothing across kissing gyri.
  • [1.5.6] binaries are added
  • [1.5.6] binaries for Windows x64 added

New features

  • Introducing LN2_LAYERS program. This program implements a vastly faster equidistant layering algorithm suitable for generating layers in very large images. Also comes with middle gray matter, thickness and approximate curvature outputs.
  • New programs with LN2 prefix are mostly experimental. Therefore, use these programs by knowing that they might be subject to extensive changes until LAYNII v2.0.0.
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