Bump version for CRAN upload

.Rbuildignore

@@ -9,3 +9,4 @@
 ^_pkgdown\.yml$
 LICENSE
 ^data-raw$
+^cran-comments\.md$

DESCRIPTION

@@ -1,11 +1,11 @@
 Package: clustree
 Type: Package
 Title: Visualise Clusterings at Different Resolutions
-Version: 0.4.0.9002
+Version: 0.4.1
 Date: 2019-08-19
 Authors@R:
     c(person("Luke", "Zappia", role = c("aut", "cre"),
-             email = "luke[email protected].au",
+             email = "luke@lazappi.id.au",
              comment = c(ORCID = "0000-0001-7744-8565")),
       person("Alicia", "Oshlack", role = c("aut"),
              email = "[email protected]",
@@ -15,7 +15,7 @@ Authors@R:
       person("Paul", "Hoffman", role = c("ctb"),
              email = "[email protected]",
              comment = c(ORCID = "0000-0002-7693-8957")))
-Maintainer: Luke Zappia <luke[email protected].au>
+Maintainer: Luke Zappia <luke@lazappi.id.au>
 Description: Deciding what resolution to use can be a difficult question when
     approaching a clustering analysis. One way to approach this problem is to
     look at how samples move as the number of clusters increases. This package

NEWS.md

@@ -1,4 +1,14 @@
-# clustree (development version)
+# clustree 0.4.1 (2019-08-19)
+
+## Bug fixes
+
+* Remove requirement for clustering matrix to be numeric (Fixes #33)
+* Fix bug where sc3_stability became character with character cluster names
+* Keep order when all cluster names are numeric
+* Improve how reducedDims are accessed on SingleCellExperiment objects
+* Fix minor typos in documentation
+
+## Development versions
 
 ### clustree 0.4.0.9002 (2019-08-19)
 

cran-comments.md

@@ -0,0 +1,12 @@
+## Test environments
+* local OS X install, R 3.6.0
+* ubuntu 16.04.6 LTS (on travis-ci), R 3.6.1
+* win-builder (devel and release)
+
+## R CMD check results
+
+0 errors | 0 warnings | 0 notes
+
+* This update should fix the CRAN checks that are currently failing
+* I have also updated the maintainer email as I will lose access to the current
+  email address in the coming months