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Add disorder prediction analysis to initial protein analysis pipeline #1

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ajtritt opened this issue Jan 4, 2024 · 0 comments
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@ajtritt
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ajtritt commented Jan 4, 2024

As proteins come in for structural prediction, we need to run protein disorder prediction along side AlphaFold. Susan runs disorder prediction using CCD, but I think we can get away with just running one disorder prediction tool, like IUPRED.

I downloaded the IUPRED code, and ran it locally using the following protein. I have verified that that the result returned by CCD is the same produced by the IUPRED command line tool.

>test
MSDVTDKCIASKAADLLTVMSTPDAETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGFDTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNKVIFSVGSTIYTEERILLRSWHLPNV
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