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[WIP] GitHub Actions test #364

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[WIP] GitHub Actions test #364

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@daler daler commented Jan 25, 2022

Now that GitHub Actions has been out for a couple of years and the allowed cache size is now 10 GB instead of 400 MB, time to try #238 again.

@daler daler changed the base branch from master to v1.9rc January 25, 2022 16:57
Base automatically changed from v1.9rc to master November 11, 2022 23:33
@daler daler changed the title Actions test GitHub Actions test Nov 12, 2022
@daler daler mentioned this pull request Nov 12, 2022
@daler daler changed the title GitHub Actions test [WIP] GitHub Actions test Nov 12, 2022
daler and others added 7 commits November 12, 2022 09:41
This is because recent versions of Snakemake use tempdir, so everything
(including the main process) needs to use it as well.
Detects SRA sampletables and raises exeception if "Layout" or "layout"
column not found.
This ensures it's always created, even if bigwigs are not created (which
otherwise cause them to enter the DAG)
- use fully-qualified `:::` for accessing lcdbwf pkg functions
- fix function and argument names in tests
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3 participants