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Snakemake bump 3 11 2 #46

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Snakemake bump 3 11 2 #46

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@jfear jfear commented Mar 22, 2017

  • Updates snakemake to 3.11.2
  • Removes pysam from tests because it was not being used
  • Removes pysam requirement from top level
  • Adds pysam requirement to rseqc wrappers

jfear added 7 commits March 21, 2017 12:15
I think it was confusing to have the requirements.txt containing
programs that are not pip installable. I think it is clearer to use an
environment.yaml. I changed things over to use a yaml file.
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