Account for starting in phase 2 #38
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This resolves #17
I'm not 100% confident in everything going on in the code, but since I ran some solver tests (I kept it ignored for Travis' sake, just ran them locally and they pass) I'm pretty confident my changes are correct. Please do double check that I didn't break something in
init2though!This also includes the commit from #37 so that one should be merged first. Since they were different purposes I just thought it would be cleaner to break them up into two separate PRs.